PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5JO5

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H1	13	H1-13-1	10	AASGFTFSNAWMS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H2	12	H2-12-1	12	RIKSKtdGGTTD	BBBBAAALLBBB
A	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	0.0	H3	22	H3-22-*	-1	ARTGKYYdfwsgyppgEEYFQD
A	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H4	8	H4-8-1	3	RDDSKNTL	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L1	11	L1-11-4	9	QGDSLRSYYAS	BEAAAAABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L2	8	L2-8-*	-1	YGKNNRPS	BEBLBBBB
B	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	55.6	L3	12	L3-12-*	-1	SSRDKSGSRlSV
B	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L4	6	L4-6-2	11	SSGNTA	BBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H1	13	H1-13-1	10	AASGFTFSNAWMS	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H2	12	H2-12-1	11	RIKSKtdGGTTD	BBBBAAALLBBB
C	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	0.0	H3	22	H3-22-*	-1	ARTGKYydfwsgyppgEEYFQD
C	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H4	8	H4-8-1	3	RDDSKNTL	BBAAALBB
D	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L1	11	L1-11-4	9	QGDSLRSYYAS	BEAAAAABBBB
D	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L2	8	L2-8-*	-1	YGKNNRPS	BEBLBBBB
D	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	55.6	L3	12	L3-12-*	-1	SSRDKSGSRlSV
D	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L4	6	L4-6-2	12	SSGNTA	BBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H1	13	H1-13-1	11	AASGFTFSNAWMS	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H2	12	H2-12-1	14	RIKSKtdGGTTD	BBBBAAALLBBB
E	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	0.0	H3	22	H3-22-*	-1	ARTGKYydfwsgyppgEEYFQD
E	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H4	8	H4-8-1	6	RDDSKNTL	BBAAALBB
F	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L1	11	L1-11-4	9	QGDSLRSYYAS	BEAAAAABBBB
F	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L2	8	L2-8-*	-1	YGKNNRPS	BEBLBBBB
F	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	55.6	L3	12	L3-12-*	-1	SSRDKSGSRlSV
F	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L4	6	L4-6-2	9	SSGNTA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H1	13	H1-13-1	11	AASGFTFSNAWMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H2	12	H2-12-1	13	RIKSKtdGGTTD	BBBBAAALLBBB
H	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	0.0	H3	22	H3-22-*	-1	ARTGKYydfwsgyppgEEYFQD
H	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H4	8	H4-8-1	5	RDDSKNTL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L1	11	L1-11-4	9	QGDSLRSYYAS	BEAAAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L2	8	L2-8-*	-1	YGKNNRPS	BEBLBBBB
L	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	55.6	L3	12	L3-12-*	-1	SSRDKSGSRlSV
L	lambda	Homo.sapiens	Hu_IGLV3-19*01	100.0	Hu_IGLV3-19*01	100.0	L4	6	L4-6-2	9	SSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024