PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5DMI

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus.Homo.sapiens	Mo_IGHV9-4*03	95.7	Mo_IGHV9-4*03	84.6	H1	13	H1-13-1	14	KASGYAFTTTGMQ	BBBLBBAAABBBB
H	heavy	Mus.musculus.Homo.sapiens	Mo_IGHV9-4*03	95.7	Mo_IGHV9-4*03	100.0	H2	10	H2-10-1	17	WINTHSGVPK	BBBAAALBBB
H	heavy	Mus.musculus.Homo.sapiens	Mo_IGHV9-4*03	95.7	Mo_IGHV9-4*03	0.0	H3	15	H3-15-*	-1	VRSGNGNYdLAYFAY
H	heavy	Mus.musculus.Homo.sapiens	Mo_IGHV9-4*03	95.7	Mo_IGHV9-4*03	87.5	H4	8	H4-8-1	11	LETSANTA	BBAAALBB
L	kappa	Mus.musculus.Homo.sapiens	Mo_IGKV5-39*01	97.1	Mo_IGKV5-39*01	100.0	L1	11	L1-11-1	13	RASQSISDYLH	BBABBAEABBB
L	kappa	Mus.musculus.Homo.sapiens	Mo_IGKV5-39*01	97.1	Mo_IGKV5-39*01	87.5	L2	8	L2-8-1	16	KYASHSIS	BLLABBBB
L	kappa	Mus.musculus.Homo.sapiens	Mo_IGKV5-39*01	97.1	Mo_IGKV5-39*01	85.7	L3	9	L3-9-cis7-*	-1	QHGHSFPWT	BBABEBbBB
L	kappa	Mus.musculus.Homo.sapiens	Mo_IGKV5-39*01	97.1	Mo_IGKV5-39*01	100.0	L4	6	L4-6-1	8	GSGSDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024