PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5DFV

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	92.3	H1	13	H1-13-1	11	KASGYTFSSSWMN	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	70.0	H2	10	H2-10-1	10	RIYSGDGDAI	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	100.0	H3	13	H3-13-*	-1	AREGKTGDLLLRS	BBBBAALBBBBAB
C	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	100.0	H4	8	H4-8-1	11	ADKSSSTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV3-12*01	98.6	Mo_IGKV3-12*01	93.3	L1	15	L1-15-*	-1	RASKSVStsiySYMH	BBABBABBAABBlBB
D	kappa	Mus.musculus	Mo_IGKV3-12*01	98.6	Mo_IGKV3-12*01	62.5	L2	8	L2-8-1	9	KYASYLES	BLEABBBB
D	kappa	Mus.musculus	Mo_IGKV3-12*01	98.6	Mo_IGKV3-12*01	71.4	L3	9	L3-9-cis7-1	10	EHSREFPFT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV3-12*01	98.6	Mo_IGKV3-12*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
E	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	92.3	H1	13	H1-13-1	12	KASGYTFSSSWMN	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	70.0	H2	10	H2-10-1	14	RIYSGDGDAI	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	100.0	H3	13	H3-13-*	-1	AREGKTGDLLLRS	BBBBABBALBBAB
E	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	100.0	H4	8	H4-8-1	15	ADKSSSTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV3-12*01	98.6	Mo_IGKV3-12*01	93.3	L1	15	L1-15-*	-1	RASKSVStsiySYMH	BBABBABBAABBBBB
F	kappa	Mus.musculus	Mo_IGKV3-12*01	98.6	Mo_IGKV3-12*01	62.5	L2	8	L2-8-1	9	KYASYLES	BLEABBBB
F	kappa	Mus.musculus	Mo_IGKV3-12*01	98.6	Mo_IGKV3-12*01	71.4	L3	9	L3-9-cis7-1	8	EHSREFPFT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV3-12*01	98.6	Mo_IGKV3-12*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024