PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4WHT

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	9	AASGFTFSDSYLA	BBBLBBAAABBBB
A	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-*	-1	SITNSGGRFY	BBBAAEEBBB
A	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	6	TRMDY	BAEAB
A	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	3	RDNAKSTL	BBAAALBB
B	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	5	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
B	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLEABBBB
B	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	8	MQTTHAPT	BBAABBBB
B	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	7	GSETDF	EBAABB
C	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	9	AASGFTFSDSYLA	BBBLBBAAABBBB
C	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-*	-1	SITNSGGRFY	BBBAAELBBB
C	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	5	TRMDY	BAEAB
C	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	4	RDNAKSTL	BBAAALBB
D	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	6	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
D	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLEABBBB
D	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	8	MQTTHAPT	BBAABBBB
D	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	7	GSETDF	EBAABB
E	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	9	AASGFTFSDSYLA	BBBLBBAAABBBB
E	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-2	14	SITNSGGRFY	BBBAALABBB
E	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	5	TRMDY	BAEAB
E	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	3	RDNAKSTL	BBAAALBB
F	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	6	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
F	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLEABBBB
F	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	8	MQTTHAPT	BBAABBBB
F	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	8	GSETDF	EBAABB
G	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	9	AASGFTFSDSYLA	BBBLBBAAABBBB
G	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-2	10	SITNSGGRFY	BBBAALABBB
G	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	5	TRMDY	BAEAB
G	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	5	RDNAKSTL	BBAAALBB
H	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	5	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
H	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLEABBBB
H	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	7	MQTTHAPT	BBAABBBB
H	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	6	GSETDF	EBAABB
I	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	9	AASGFTFSDSYLA	BBBLBBAAABBBB
I	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-2	12	SITNSGGRFY	BBBAALABBB
I	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	5	TRMDY	BAEAB
I	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	4	RDNAKSTL	BBAAALBB
J	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	6	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
J	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLEABBBB
J	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	7	MQTTHAPT	BBAABBBB
J	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	8	GSETDF	EBAABB
K	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	13	AASGFTFSDSYLA	BBBLBBAAABBBB
K	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-2	14	SITNSGGRFY	BBBAALABBB
K	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	5	TRMDY	BAEAB
K	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	5	RDNAKSTL	BBAAALBB
L	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	6	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
L	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLEABBBB
L	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	7	MQTTHAPT	BBAABBBB
L	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	8	GSETDF	EBAABB
M	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	10	AASGFTFSDSYLA	BBBLBBAAABBBB
M	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-*	-1	SITNSGGRFY	BBBAAEEBBB
M	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	6	TRMDY	BAEAB
M	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	4	RDNAKSTL	BBAAALBB
N	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	6	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
N	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLEABBBB
N	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	8	MQTTHAPT	BBAABBBB
N	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	7	GSETDF	EBAABB
O	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	10	AASGFTFSDSYLA	BBBLBBAAABBBB
O	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-*	-1	SITNSGGRFY	BBBAAELBBB
O	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	5	TRMDY	BAEAB
O	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	3	RDNAKSTL	BBAAALBB
P	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	6	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
P	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLEABBBB
P	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	7	MQTTHAPT	BBAABBBB
P	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	7	GSETDF	EBAABB
Q	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	10	AASGFTFSDSYLA	BBBLBBAAABBBB
Q	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-*	-1	SITNSGGRFY	BBBAAELBBB
Q	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	5	TRMDY	BAEAB
Q	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	5	RDNAKSTL	BBAAALBB
R	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	6	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
R	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLEABBBB
R	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	8	MQTTHAPT	BBAABBBB
R	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	7	GSETDF	EBAABB
S	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	9	AASGFTFSDSYLA	BBBLBBAAABBBB
S	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-*	-1	SITNSGGRFY	BBBAAEEBBB
S	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	5	TRMDY	BAEAB
S	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	5	RDNAKSTL	BBAAALBB
T	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	5	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
T	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLEABBBB
T	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	8	MQTTHAPT	BBAABBBB
T	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	8	GSETDF	EBAABB
U	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	10	AASGFTFSDSYLA	BBBLBBAAABBBB
U	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-*	-1	SITNSGGRFY	BBBAAEEBBB
U	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	6	TRMDY	BAEAB
U	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	4	RDNAKSTL	BBAAALBB
V	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	5	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
V	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLEABBBB
V	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	8	MQTTHAPT	BBAABBBB
V	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	8	GSETDF	EBAABB
X	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	9	AASGFTFSDSYLA	BBBLBBAAABBBB
X	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-*	-1	SITNSGGRFY	BBBAAEEBBB
X	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	6	TRMDY	BAEAB
X	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	5	RDNAKSTL	BBAAALBB
Y	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	7	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
Y	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	5	YSVSNLES	BLEABBBB
Y	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	9	MQTTHAPT	BBAABBBB
Y	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	9	GSETDF	EBAABB

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