PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4HIJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	81.8	L1	11	L1-11-*	-1	RASQSVTNYLA	BBABABAAABB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	87.5	L2	8	L2-8-1	11	YGASNRAT	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	85.7	L3	11	L3-11-*	-1	QQRDNWPpdAT	BBBBABbABBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-2	15	GSGTDF	BBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-30*18	97.2	Hu_IGHV3-30*18	92.3	H1	13	H1-13-1	11	AASGFTFSRYGMH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-30*18	97.2	Hu_IGHV3-30*18	50.0	H2	10	H2-10-2	13	VVSSDGRTTY	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-30*18	97.2	Hu_IGHV3-30*18	100.0	H3	13	H3-13-*	-1	AKEGGDNKFSFDY	BBBBAABAABBAB
B	heavy	Homo.sapiens	Hu_IGHV3-30*18	97.2	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	12	RDNSKNTL	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	81.8	L1	11	L1-11-*	-1	RASQSVTNYLA	BBABABAAABB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	87.5	L2	8	L2-8-1	11	YGASNRAT	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	85.7	L3	11	L3-11-*	-1	QQRDNWPpdAT	BBBBABbABBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-2	15	GSGTDF	BBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-30*18	97.2	Hu_IGHV3-30*18	92.3	H1	13	H1-13-1	8	AASGFTFSRYGMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*18	97.2	Hu_IGHV3-30*18	50.0	H2	10	H2-10-2	9	VVSSDGRTTY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*18	97.2	Hu_IGHV3-30*18	100.0	H3	13	H3-13-*	-1	AKEGGDNKFSFDY	BBBBAABAABBAB
D	heavy	Homo.sapiens	Hu_IGHV3-30*18	97.2	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	12	RDNSKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024