PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3V4P

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1-69*02	97.3	Mo_IGHV1-69*02	84.6	H1	13	H1-13-1	18	KGYGYTFTSYWMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-69*02	97.3	Mo_IGHV1-69*02	80.0	H2	10	H2-10-1	13	EIDPSESNTN	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-69*02	97.3	Mo_IGHV1-69*02	100.0	H3	14	H3-14-*	-1	ARGGYDGWDYAIDY	BBBBBBEABBBBAB
H	heavy	Mus.musculus	Mo_IGHV1-69*02	97.3	Mo_IGHV1-69*02	87.5	H4	8	H4-8-1	13	VDISSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-88*01	100.0	Mo_IGKV1-88*01	93.8	L1	16	L1-16-1	16	RSSQSLaksygNTYLS	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-88*01	100.0	Mo_IGKV1-88*01	100.0	L2	8	L2-8-1	11	YGISNRFS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-88*01	100.0	Mo_IGKV1-88*01	100.0	L3	9	L3-9-cis7-1	10	LQGTHQPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-88*01	100.0	Mo_IGKV1-88*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
M	heavy	Mus.musculus	Mo_IGHV1-69*02	97.3	Mo_IGHV1-69*02	84.6	H1	13	H1-13-1	18	KGYGYTFTSYWMH	BBBLBBAAABBBB
M	heavy	Mus.musculus	Mo_IGHV1-69*02	97.3	Mo_IGHV1-69*02	80.0	H2	10	H2-10-1	13	EIDPSESNTN	BBBAAALBBB
M	heavy	Mus.musculus	Mo_IGHV1-69*02	97.3	Mo_IGHV1-69*02	100.0	H3	14	H3-14-*	-1	ARGGYDGWDYAIDY	BBBBBBEABBBBAB
M	heavy	Mus.musculus	Mo_IGHV1-69*02	97.3	Mo_IGHV1-69*02	87.5	H4	8	H4-8-1	13	VDISSSTA	BBAAALBB
N	kappa	Mus.musculus	Mo_IGKV1-88*01	100.0	Mo_IGKV1-88*01	93.8	L1	16	L1-16-1	16	RSSQSLaksygNTYLS	BBABBABBAALBBBBB
N	kappa	Mus.musculus	Mo_IGKV1-88*01	100.0	Mo_IGKV1-88*01	100.0	L2	8	L2-8-1	11	YGISNRFS	BLEABBBB
N	kappa	Mus.musculus	Mo_IGKV1-88*01	100.0	Mo_IGKV1-88*01	100.0	L3	9	L3-9-cis7-1	10	LQGTHQPYT	BBAABBbBB
N	kappa	Mus.musculus	Mo_IGKV1-88*01	100.0	Mo_IGKV1-88*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024