PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3NIF

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Mus.musculus	Mo_IGHV14-3*02	100.0	Mo_IGHV14-3*02	92.3	H1	13	H1-13-1	17	TASGFNIKDTYVH	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV14-3*02	100.0	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	8	RIDPANGYTK	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV14-3*02	100.0	Mo_IGHV14-3*02	50.0	H3	12	H3-12-*	-1	VRPLYDYYAMDY	BBBAABAABBAB
E	heavy	Mus.musculus	Mo_IGHV14-3*02	100.0	Mo_IGHV14-3*02	100.0	H4	8	H4-8-1	11	ADTSSNTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV14-100*01	97.1	Mo_IGKV14-100*01	100.0	L1	11	L1-11-2	8	HASQGISSNIG	BBABBALLBBB
F	kappa	Mus.musculus	Mo_IGKV14-100*01	97.1	Mo_IGKV14-100*01	75.0	L2	8	L2-8-1	8	YYGTNLVD	BLEABBBB
F	kappa	Mus.musculus	Mo_IGKV14-100*01	97.1	Mo_IGKV14-100*01	85.7	L3	9	L3-9-cis7-1	5	VQYAQLPYT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV14-100*01	97.1	Mo_IGKV14-100*01	100.0	L4	6	L4-6-1	10	GSGADY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	100.0	Mo_IGHV14-3*02	92.3	H1	13	H1-13-1	16	TASGFNIKDTYVH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	100.0	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	8	RIDPANGYTK	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	100.0	Mo_IGHV14-3*02	50.0	H3	12	H3-12-*	-1	VRPLYDYYAMDY	BBBAABAABBAB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	100.0	Mo_IGHV14-3*02	100.0	H4	8	H4-8-1	7	ADTSSNTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV14-100*01	97.1	Mo_IGKV14-100*01	100.0	L1	11	L1-11-2	6	HASQGISSNIG	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV14-100*01	97.1	Mo_IGKV14-100*01	75.0	L2	8	L2-8-1	8	YYGTNLVD	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV14-100*01	97.1	Mo_IGKV14-100*01	85.7	L3	9	L3-9-cis7-1	6	VQYAQLPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV14-100*01	97.1	Mo_IGKV14-100*01	100.0	L4	6	L4-6-1	8	GSGADY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024