PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2UYL

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	93.8	L1	16	L1-16-1	12	RSSQSIvhsngDTYLE	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	87.5	L2	8	L2-8-1	6	YKVSNRFS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	100.0	L3	9	L3-9-cis7-1	10	FQGSHVPRT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	100.0	L4	6	L4-6-1	10	GSGTDF	EEEABB
B	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	92.3	H1	13	H1-13-1	9	KASGYTFTSNWIN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	80.0	H2	10	H2-10-1	7	HISPGSSSTN	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	50.0	H3	12	H3-12-*	-1	GREETVRASFGN	BBBBBLABABAB
B	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	100.0	H4	8	H4-8-1	4	VDTSSSTA	BBAAALBB
M	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	93.8	L1	16	L1-16-1	12	RSSQSIvhsngDTYLE	BBABBABBAALBBBBB
M	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	87.5	L2	8	L2-8-1	6	YKVSNRFS	BLEABBBB
M	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	100.0	L3	9	L3-9-cis7-1	10	FQGSHVPRT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
N	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	92.3	H1	13	H1-13-1	8	KASGYTFTSNWIN	BBBLBBAAABBBB
N	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	80.0	H2	10	H2-10-1	6	HISPGSSSTN	BBBAAALBBB
N	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	50.0	H3	12	H3-12-*	-1	GREETVRASFGN	BBBBBLABABAB
N	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	100.0	H4	8	H4-8-1	4	VDTSSSTA	BBAAALBB
V	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	93.8	L1	16	L1-16-1	12	RSSQSIvhsngDTYLE	BBABBABBAALBBBBB
V	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	87.5	L2	8	L2-8-1	6	YKVSNRFS	BLEABBBB
V	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	100.0	L3	9	L3-9-cis7-1	7	FQGSHVPRT	BBAABBbBB
V	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
W	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	92.3	H1	13	H1-13-1	9	KASGYTFTSNWIN	BBBLBBAAABBBB
W	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	80.0	H2	10	H2-10-1	7	HISPGSSSTN	BBBAAALBBB
W	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	50.0	H3	12	H3-12-*	-1	GREETVRASFGN	BBBBBLABABAB
W	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	100.0	H4	8	H4-8-1	6	VDTSSSTA	BBAAALBB
X	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	93.8	L1	16	L1-16-1	11	RSSQSIvhsngDTYLE	BBABBABBAALBBBBB
X	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	87.5	L2	8	L2-8-1	8	YKVSNRFS	BLEABBBB
X	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	100.0	L3	9	L3-9-cis7-1	8	FQGSHVPRT	BBAABBbBB
X	kappa	Mus.musculus	Mo_IGKV1-117*02	95.6	Mo_IGKV1-117*02	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
Y	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	92.3	H1	13	H1-13-1	9	KASGYTFTSNWIN	BBBLBBAAABBBB
Y	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	80.0	H2	10	H2-10-1	6	HISPGSSSTN	BBBAAALBBB
Y	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	50.0	H3	12	H3-12-*	-1	GREETVRASFGN	BBBBBLABABAB
Y	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	100.0	H4	8	H4-8-1	7	VDTSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024