PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2FJF

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	5	RASQDVSTAVA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	8	YSASFLYS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	12	QQSYTTPPT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	11	AASGFTISDYWIH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	12	GITPAGGYTY	BBBBLLABBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	11	RASQDVSTAVA	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	6	YSASFLYS	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	12	QQSYTTPPT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	11	AASGFTISDYWIH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	13	GITPAGGYTY	BBBBLLABBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	7	RASQDVSTAVA	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	9	YSASFLYS	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	9	QQSYTTPPT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	12	AASGFTISDYWIH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	13	GITPAGGYTY	BBBBLLABBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	5	RASQDVSTAVA	BBABBAEABBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	7	YSASFLYS	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	7	QQSYTTPPT	BBAABBbBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	10	AASGFTISDYWIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	11	GITPAGGYTY	BBBBLLABBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	10	AASGFTISDYWIH	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	13	GITPAGGYTY	BBBBLLABBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB
J	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	9	RASQDVSTAVA	BBABBAEABBB
J	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	6	YSASFLYS	BLLABBBB
J	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	9	QQSYTTPPT	BBAABBbBB
J	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
K	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	10	AASGFTISDYWIH	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	12	GITPAGGYTY	BBBBLLABBB
K	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
K	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	7	RASQDVSTAVA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	6	YSASFLYS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	7	QQSYTTPPT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	5	RASQDVSTAVA	BBABBAEABBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	6	YSASFLYS	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	8	QQSYTTPPT	BBAABBbBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
N	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	9	AASGFTISDYWIH	BBBLBBAAABBBB
N	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	15	GITPAGGYTY	BBBBLLABBB
N	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
N	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	8	RASQDVSTAVA	BBABBAEABBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	8	YSASFLYS	BLLABBBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	8	QQSYTTPPT	BBAABBbBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
P	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	10	AASGFTISDYWIH	BBBLBBAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	11	GITPAGGYTY	BBBBLLABBB
P	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
P	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	7	RASQDVSTAVA	BBABBAEABBB
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	7	YSASFLYS	BLLABBBB
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	11	QQSYTTPPT	BBAABBbBB
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
R	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	10	AASGFTISDYWIH	BBBLBBAAABBBB
R	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	10	GITPAGGYTY	BBBBLLABBB
R	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
R	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	10	RASQDVSTAVA	BBABBAEABBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	7	YSASFLYS	BLLABBBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	8	QQSYTTPPT	BBAABBbBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	3	GSGTDF	EBEABB
T	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	9	AASGFTISDYWIH	BBBLBBAAABBBB
T	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	12	GITPAGGYTY	BBBBLLABBB
T	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
T	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	7	RASQDVSTAVA	BBABBAEABBB
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	7	YSASFLYS	BLLABBBB
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	9	QQSYTTPPT	BBAABBbBB
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
V	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	9	AASGFTISDYWIH	BBBLBBAAABBBB
V	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	12	GITPAGGYTY	BBBBLLABBB
V	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
V	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
W	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	5	RASQDVSTAVA	BBABBAEABBB
W	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	6	YSASFLYS	BLLABBBB
W	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	9	QQSYTTPPT	BBAABBbBB
W	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
X	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	10	AASGFTISDYWIH	BBBLBBAAABBBB
X	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	12	GITPAGGYTY	BBBBLLABBB
X	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
X	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB

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