PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1YUH

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-*	-1	RSSTGAVTtSNYAN	BBABEBBBAAALBB
A	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L2	8	L2-8-*	-1	GGTNNRGP	BLLABBBA
A	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-4	15	ALWYSNHWV	BBBBEABBB
A	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	35	LIGDKA	BBEABB
B	heavy	Mus.musculus	Mo_IGHV1-72*01	93.2	Mo_IGHV1-72*01	92.3	H1	13	H1-13-1	14	KASGYTFTSYLMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-72*01	93.2	Mo_IGHV1-72*01	70.0	H2	10	H2-10-*	-1	RIDPNNVVTK	BBBAAALEBB
B	heavy	Mus.musculus	Mo_IGHV1-72*01	93.2	Mo_IGHV1-72*01	100.0	H3	11	H3-11-*	-1	ARYAYCRPMDY	BBBABEBABAB
B	heavy	Mus.musculus	Mo_IGHV1-72*01	93.2	Mo_IGHV1-72*01	100.0	H4	8	H4-8-1	13	VDKPSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1-72*01	93.2	Mo_IGHV1-72*01	92.3	H1	13	H1-13-1	20	KASGYTFTSYLMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-72*01	93.2	Mo_IGHV1-72*01	70.0	H2	10	H2-10-1	21	RIDPNNVVTK	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-72*01	93.2	Mo_IGHV1-72*01	100.0	H3	11	H3-11-*	-1	ARYAYCRPMDY	BBBBBLBABAB
H	heavy	Mus.musculus	Mo_IGHV1-72*01	93.2	Mo_IGHV1-72*01	100.0	H4	8	H4-8-1	24	VDKPSSTA	BBAAALBB
L	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-*	-1	RSSTGAVTtSNYAN	BBABEBBBAAALBB
L	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L2	8	L2-8-1	16	GGTNNRGP	BLLABBBB
L	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-4	21	ALWYSNHWV	BBBBEAEBB
L	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	37	LIGDKA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024