PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1ND0

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	75.0	L1	16	L1-16-1	12	KSSQRLlnsngKTFLN	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	75.0	L2	8	L2-8-1	10	YLGTKLDS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	10	WQGTHFPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	92.9	H1	14	H1-14-*	-1	TVTGYSITsDFAWN	BBBLBBAABLBBBB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	77.8	H2	9	H2-9-1	10	YINYSGFTS	BBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	50.0	H3	12	H3-12-*	-1	AGLLWYDGGAGS	BBBBAAALBLBB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	100.0	H4	8	H4-8-1	8	RDTSKNQF	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	75.0	L1	16	L1-16-1	12	KSSQRLlnsngKTFLN	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	75.0	L2	8	L2-8-1	10	YLGTKLDS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	10	WQGTHFPYT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	92.9	H1	14	H1-14-*	-1	TVTGYSITsDFAWN	BBBLBBAABLBBBB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	77.8	H2	9	H2-9-1	10	YINYSGFTS	BBBAALBBB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	50.0	H3	12	H3-12-*	-1	AGLLWYDGGAGS	BBBBAAALBLBB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	100.0	H4	8	H4-8-1	8	RDTSKNQF	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	75.0	L1	16	L1-16-1	12	KSSQRLlnsngKTFLN	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	75.0	L2	8	L2-8-1	10	YLGTKLDS	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	10	WQGTHFPYT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	92.9	H1	14	H1-14-*	-1	TVTGYSITsDFAWN	BBBLBBAABLBBBB
F	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	77.8	H2	9	H2-9-1	10	YINYSGFTS	BBBAALBBB
F	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	50.0	H3	12	H3-12-*	-1	AGLLWYDGGAGS	BBBBAAALBLBB
F	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	100.0	H4	8	H4-8-1	9	RDTSKNQF	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	75.0	L1	16	L1-16-1	12	KSSQRLlnsngKTFLN	BBABBABBAALBBBBB
G	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	75.0	L2	8	L2-8-1	10	YLGTKLDS	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	10	WQGTHFPYT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV1-135*01	95.7	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	92.9	H1	14	H1-14-*	-1	TVTGYSITsDFAWN	BBBLBBAABLBBBB
H	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	77.8	H2	9	H2-9-1	10	YINYSGFTS	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	50.0	H3	12	H3-12-*	-1	AGLLWYDGGAGS	BBBBAAALBLBB
H	heavy	Mus.musculus	Mo_IGHV3-2*02	97.2	Mo_IGHV3-2*02	100.0	H4	8	H4-8-1	8	RDTSKNQF	BBAAALBB

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