PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1MLC

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L1	11	L1-11-1	10	RASQSISNNLH	BBABBAEABBB
A	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	75.0	L2	8	L2-8-1	14	KYVSQSSS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L3	9	L3-9-cis7-1	16	QQSNSWPRT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L4	6	L4-6-1	14	GSGTDF	EEEABB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	84.6	H1	13	H1-13-1	15	KATGYTFSTYWIE	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	90.0	H2	10	H2-10-3	14	EILPGSGSTY	BBBBLALBBB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H3	9	H3-9-*	-1	ARGDGNYGY	BBBAEBBAB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	14	ADTSSNTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L1	11	L1-11-1	15	RASQSISNNLH	BBABBAEABBB
C	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	75.0	L2	8	L2-8-1	15	KYVSQSSS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L3	9	L3-9-cis7-1	16	QQSNSWPRT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L4	6	L4-6-*	-1	GSGTDF	EEEABB
D	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	84.6	H1	13	H1-13-1	13	KATGYTFSTYWIE	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	90.0	H2	10	H2-10-3	20	EILPGSGSTY	BBBBLALBBB
D	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H3	9	H3-9-*	-1	ARGDGNYGY	BBBAEBBAB
D	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	20	ADTSSNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024