PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1MJJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV2-137*01	100.0	Mo_IGKV2-137*01	100.0	L1	16	L1-16-1	7	RSSKSLlhsngNTYLY	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV2-137*01	100.0	Mo_IGKV2-137*01	100.0	L2	8	L2-8-1	6	YRMSNLAS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV2-137*01	100.0	Mo_IGKV2-137*01	85.7	L3	9	L3-9-cis7-1	4	LQHLEYPFT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV2-137*01	100.0	Mo_IGKV2-137*01	100.0	L4	6	L4-6-3	9	GSGTAF	EBAABB
B	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	92.3	H1	13	H1-13-1	8	KASGYTFTNYWIN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	80.0	H2	10	H2-10-1	10	NIYPGSSYTH	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	50.0	H3	9	H3-9-*	-1	ANKLGWFPY	BBBBEABBB
B	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	100.0	H4	8	H4-8-1	8	VDTSSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	92.3	H1	13	H1-13-1	6	KASGYTFTNYWIN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	80.0	H2	10	H2-10-1	8	NIYPGSSYTH	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	50.0	H3	9	H3-9-*	-1	ANKLGWFPY	BBBBEABBB
H	heavy	Mus.musculus	Mo_IGHV1S61*01	98.6	Mo_IGHV1S61*01	100.0	H4	8	H4-8-1	8	VDTSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV2-137*01	100.0	Mo_IGKV2-137*01	100.0	L1	16	L1-16-1	7	RSSKSLlhsngNTYLY	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV2-137*01	100.0	Mo_IGKV2-137*01	100.0	L2	8	L2-8-1	7	YRMSNLAS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV2-137*01	100.0	Mo_IGKV2-137*01	85.7	L3	9	L3-9-cis7-1	5	LQHLEYPFT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV2-137*01	100.0	Mo_IGKV2-137*01	100.0	L4	6	L4-6-3	9	GSGTAF	EBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024