PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1A4J

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Mo_IGKV1-110*01	98.5	Mo_IGKV1-110*01	100.0	L1	16	L1-16-1	14	RSSQSLvhsngNTYLH	BBABBABBAAEBBBBB
A	kappa	Homo.sapiens	Mo_IGKV1-110*01	98.5	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	5	YKVSNRFS	BLEABBBB
A	kappa	Homo.sapiens	Mo_IGKV1-110*01	98.5	Mo_IGKV1-110*01	100.0	L3	9	L3-9-2	19	SQSTHVPPT	BBAABABBB
A	kappa	Homo.sapiens	Mo_IGKV1-110*01	98.5	Mo_IGKV1-110*01	100.0	L4	6	L4-6-3	24	GSGTDF	EAAABB
B	heavy	Mus.musculus	Mo_IGHV9-1*03	95.7	Mo_IGHV9-1*03	100.0	H1	13	H1-13-*	-1	KASGYTFTNYGMN	BBBBLAAAABBBB
B	heavy	Mus.musculus	Mo_IGHV9-1*03	95.7	Mo_IGHV9-1*03	100.0	H2	10	H2-10-1	16	WINTYTGEPT	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV9-1*03	95.7	Mo_IGHV9-1*03	0.0	H3	12	H3-12-1	16	VQAERLRRTFDY	BBBBAAALBBAB
B	heavy	Mus.musculus	Mo_IGHV9-1*03	95.7	Mo_IGHV9-1*03	100.0	H4	8	H4-8-1	14	LETSASTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV9-1*03	95.7	Mo_IGHV9-1*03	100.0	H1	13	H1-13-*	-1	KASGYTFTNYGMN	BBBBLLAAABBBB
H	heavy	Mus.musculus	Mo_IGHV9-1*03	95.7	Mo_IGHV9-1*03	100.0	H2	10	H2-10-1	16	WINTYTGEPT	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV9-1*03	95.7	Mo_IGHV9-1*03	0.0	H3	12	H3-12-1	14	VQAERLRRTFDY	BBBBAAALBBAB
H	heavy	Mus.musculus	Mo_IGHV9-1*03	95.7	Mo_IGHV9-1*03	100.0	H4	8	H4-8-1	11	LETSASTA	BBAAALBB
L	kappa	Homo.sapiens	Mo_IGKV1-110*01	98.5	Mo_IGKV1-110*01	100.0	L1	16	L1-16-1	15	RSSQSLvhsngNTYLH	BBABBABBAAEBBBBB
L	kappa	Homo.sapiens	Mo_IGKV1-110*01	98.5	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	5	YKVSNRFS	BLEABBBB
L	kappa	Homo.sapiens	Mo_IGKV1-110*01	98.5	Mo_IGKV1-110*01	100.0	L3	9	L3-9-2	21	SQSTHVPPT	BBAABABBB
L	kappa	Homo.sapiens	Mo_IGKV1-110*01	98.5	Mo_IGKV1-110*01	100.0	L4	6	L4-6-3	28	GSGTDF	EAAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024