PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7ZFA

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	84.6	H1	13	H1-13-1	10	TVSGGSISRYSWS	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	66.7	H2	9	H2-9-1	10	RMYSSGGTN	BBBAALBBB
E	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	50.0	H3	18	H3-18-*	-1	AAASIdqvwGTYRDAFDI
E	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	75.0	H4	8	H4-8-1	10	LDTSKKQF	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	6	RAGQSISSFLH	BBABBAEABBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	5	YDASSLQS	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	5	QQSYENPLT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	84.6	H1	13	H1-13-1	10	TVSGGSISRYSWS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	66.7	H2	9	H2-9-1	10	RMYSSGGTN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	50.0	H3	18	H3-18-*	-1	AAASIdqvwGTYRDAFDI
H	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	75.0	H4	8	H4-8-1	10	LDTSKKQF	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	84.6	H1	13	H1-13-1	10	TVSGGSISRYSWS	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	66.7	H2	9	H2-9-1	10	RMYSSGGTN	BBBAALBBB
J	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	50.0	H3	18	H3-18-*	-1	AAASIdqvwGTYRDAFDI
J	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	75.0	H4	8	H4-8-1	10	LDTSKKQF	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	6	RAGQSISSFLH	BBABBAEABBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	5	YDASSLQS	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	5	QQSYENPLT	BBAABBbBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	6	RAGQSISSFLH	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	5	YDASSLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	5	QQSYENPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	84.6	H1	13	H1-13-1	10	TVSGGSISRYSWS	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	66.7	H2	9	H2-9-1	10	RMYSSGGTN	BBBAALBBB
M	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	50.0	H3	18	H3-18-*	-1	AAASIdqvwGTYRDAFDI
M	heavy	Homo.sapiens	Hu_IGHV4-4*07	91.8	Hu_IGHV4-4*07	75.0	H4	8	H4-8-1	10	LDTSKKQF	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	6	RAGQSISSFLH	BBABBAEABBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	5	YDASSLQS	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	5	QQSYENPLT	BBAABBbBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	92.3	H1	13	H1-13-1	20	AASGVTVSSNYMS	BBBEBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	77.8	H2	9	H2-9-1	7	IIYSGGTTY	BBBAALBBB
O	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	100.0	H3	11	H3-11-*	-1	ARDLMVYGIDV	BBBAEAAEBAB
O	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	75.0	H4	8	H4-8-1	8	RDSSMNTL	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	9	RASQGISSYLA	BBABBAEABBB
P	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	5	YAASTLQS	BLLABBBB
P	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	85.7	L3	11	L3-11-*	-1	QQLDSYppgYT	BBBBABbBELB
P	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	83.3	L4	6	L4-6-1	13	GSGTDF	EBEABB
Q	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	92.3	H1	13	H1-13-1	20	AASGVTVSSNYMS	BBBEBBAAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	77.8	H2	9	H2-9-1	7	IIYSGGTTY	BBBAALBBB
Q	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	100.0	H3	11	H3-11-*	-1	ARDLMVYGIDV	BBBAEAAEBAB
Q	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	75.0	H4	8	H4-8-1	8	RDSSMNTL	BBAAALBB
R	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	9	RASQGISSYLA	BBABBAEABBB
R	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	5	YAASTLQS	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	85.7	L3	11	L3-11-*	-1	QQLDSYppgYT	BBBBABbBELB
R	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	83.3	L4	6	L4-6-1	13	GSGTDF	EBEABB
S	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	92.3	H1	13	H1-13-1	20	AASGVTVSSNYMS	BBBEBBAAABBBB
S	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	77.8	H2	9	H2-9-1	7	IIYSGGTTY	BBBAALBBB
S	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	100.0	H3	11	H3-11-*	-1	ARDLMVYGIDV	BBBAEAAEBAB
S	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	75.0	H4	8	H4-8-1	8	RDSSMNTL	BBAAALBB
T	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	9	RASQGISSYLA	BBABBAEABBB
T	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	5	YAASTLQS	BLLABBBB
T	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	85.7	L3	11	L3-11-*	-1	QQLDSYppgYT	BBBBABbBELB
T	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	83.3	L4	6	L4-6-1	13	GSGTDF	EBEABB
X	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	92.3	H1	13	H1-13-1	20	AASGVTVSSNYMS	BBBEBBAAABBBB
X	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	77.8	H2	9	H2-9-1	7	IIYSGGTTY	BBBAALBBB
X	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	100.0	H3	11	H3-11-*	-1	ARDLMVYGIDV	BBBAEAAEBAB
X	heavy	Homo.sapiens	Hu_IGHV3-53*01	95.9	Hu_IGHV3-53*01	75.0	H4	8	H4-8-1	8	RDSSMNTL	BBAAALBB
Y	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	9	RASQGISSYLA	BBABBAEABBB
Y	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	5	YAASTLQS	BLLABBBB
Y	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	85.7	L3	11	L3-11-*	-1	QQLDSYppgYT	BBBBABbBELB
Y	kappa	Homo.sapiens	Hu_IGKV1-9*01	94.1	Hu_IGKV1-9*01	83.3	L4	6	L4-6-1	13	GSGTDF	EBEABB

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