PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7SFW

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
M	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	69.2	H1	13	H1-13-*	-1	KSSGYTFTNYIIH	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	100.0	H2	10	H2-10-1	20	WINAGNGNTK	BBBAAALBBB
M	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	50.0	H3	15	H3-15-*	-1	ATLQMdYGGNGDLDY
M	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	87.5	H4	8	H4-8-1	23	RDTSASAA	BBAAALBB
N	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	90.9	L1	11	L1-11-4	13	SGDALPKQYVY	BBAAAAABBBB
N	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	100.0	L2	8	L2-8-*	-1	YKDSERPS	BLLABBBB
N	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	66.7	L3	11	L3-11-2	10	QAADSSNTEYV	BBBBAALABBB
N	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	100.0	L4	6	L4-6-2	10	SSGTTV	BBEABB
O	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	69.2	H1	13	H1-13-*	-1	KSSGYTFTNYIIH	BBBLBBAABBBBB
O	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	100.0	H2	10	H2-10-1	12	WINAGNGNTK	BBBAAALBBB
O	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	50.0	H3	15	H3-15-*	-1	ATLQMdYGGNGDLDY
O	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	87.5	H4	8	H4-8-1	17	RDTSASAA	BBAAALBB
P	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	90.9	L1	11	L1-11-4	17	SGDALPKQYVY	BBAAAAABBBB
P	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	100.0	L2	8	L2-8-1	20	YKDSERPS	BLLABBBB
P	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	66.7	L3	11	L3-11-2	13	QAADSSNTEYV	BBBBAALABBB
P	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	100.0	L4	6	L4-6-2	10	SSGTTV	BBEABB
Q	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	69.2	H1	13	H1-13-1	22	KSSGYTFTNYIIH	BBBLBBAAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	100.0	H2	10	H2-10-1	17	WINAGNGNTK	BBBAAALBBB
Q	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	50.0	H3	15	H3-15-*	-1	ATLQMdYGGNGDLDY
Q	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	87.5	H4	8	H4-8-1	15	RDTSASAA	BBAAALBB
R	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	90.9	L1	11	L1-11-4	12	SGDALPKQYVY	BBAAAAABBBB
R	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	100.0	L2	8	L2-8-1	20	YKDSERPS	BLLABBBB
R	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	66.7	L3	11	L3-11-2	19	QAADSSNTEYV	BBBBAALABBB
R	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	100.0	L4	6	L4-6-2	9	SSGTTV	BBEABB
S	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	69.2	H1	13	H1-13-*	-1	KSSGYTFTNYIIH	BBBLBBAAABBBB
S	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	100.0	H2	10	H2-10-1	24	WINAGNGNTK	BBBAAALBBB
S	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	50.0	H3	15	H3-15-*	-1	ATLQMdYGGNGDLDY
S	heavy	Homo.sapiens	Hu_IGHV1-3*01	91.8	Hu_IGHV1-3*01	87.5	H4	8	H4-8-1	14	RDTSASAA	BBAAALBB
T	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	90.9	L1	11	L1-11-4	12	SGDALPKQYVY	BEAAAAABBBB
T	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	100.0	L2	8	L2-8-1	24	YKDSERPS	BLLABBBB
T	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	66.7	L3	11	L3-11-2	13	QAADSSNTEYV	BBBBAALABBB
T	lambda	Homo.sapiens	Hu_IGLV3-25*02	98.5	Hu_IGLV3-25*02	100.0	L4	6	L4-6-2	12	SSGTTV	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024