PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7L7E

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	92.3	H1	13	H1-13-1	18	KASGFTFMSSAVQ	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	90.0	H2	10	H2-10-1	10	WIVIGSGNTN	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	100.0	H3	16	H3-16-*	-1	AAPYcsSISCNDGFDI
A	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	100.0	H4	8	H4-8-1	7	RDMSTSTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L1	12	L1-12-1	9	RASQSVSsSYLA	BBABBBBAAABB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	7	YGASSRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	71.4	L3	10	L3-10-*	-1	QHYGSSrGWT	BBABEABLBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	76.9	H1	13	H1-13-1	18	AASGFTFRDVWMS	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	91.7	H2	12	H2-12-1	19	RIKSKidGGTTD	BBBBAAALLBBB
C	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H3	22	H3-22-*	-1	TTAGSYYYDTvgpglpegKFDY
C	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H4	8	H4-8-1	6	RDDSKNTL	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	100.0	L1	17	L1-17-*	-1	KSSQSVlyssnnKNYLA	BBABBABBAAALBBBBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	85.7	L3	8	L3-8-1	12	QQYYSTLT	BBAABEBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	66.7	L4	6	L4-6-1	9	GSGAEF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	76.9	H1	13	H1-13-1	14	AASGFTFRDVWMS	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	91.7	H2	12	H2-12-1	15	RIKSKidGGTTD	BBBBAAALLBBB
E	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H3	22	H3-22-*	-1	TTAGSYYYDTvgpglpegKFDY
E	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H4	8	H4-8-1	11	RDDSKNTL	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	100.0	L1	17	L1-17-1	13	KSSQSVlyssnnKNYLA	BBABBABBAAALBBBBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	8	YWASTRES	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	85.7	L3	8	L3-8-1	7	QQYYSTLT	BBAABEBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	66.7	L4	6	L4-6-1	12	GSGAEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	92.3	H1	13	H1-13-1	19	KASGFTFMSSAVQ	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	90.0	H2	10	H2-10-1	13	WIVIGSGNTN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	100.0	H3	16	H3-16-*	-1	AAPYcsSISCNDGFDI
H	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	100.0	H4	8	H4-8-1	7	RDMSTSTA	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	92.3	H1	13	H1-13-1	20	KASGFTFMSSAVQ	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	90.0	H2	10	H2-10-1	10	WIVIGSGNTN	BBBAAALBBB
I	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	100.0	H3	16	H3-16-*	-1	AAPYcsSISCNDGFDI
I	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	100.0	H4	8	H4-8-1	5	RDMSTSTA	BBAAALBB
J	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L1	12	L1-12-1	14	RASQSVSsSYLA	BBABBBBAABBB
J	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	15	YGASSRAT	BLLABBBB
J	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	71.4	L3	10	L3-10-*	-1	QHYGSSrGWT	BBABEABLBB
J	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L1	12	L1-12-1	10	RASQSVSsSYLA	BBABBBBAAABB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	13	YGASSRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	71.4	L3	10	L3-10-*	-1	QHYGSSrGWT	BBABEABLBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	76.9	H1	13	H1-13-1	17	AASGFTFRDVWMS	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	91.7	H2	12	H2-12-1	18	RIKSKidGGTTD	BBBBAAALLBBB
M	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H3	22	H3-22-*	-1	TTAGSYYYDTvgpglpegKFDY
M	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H4	8	H4-8-1	8	RDDSKNTL	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	100.0	L1	17	L1-17-1	12	KSSQSVlyssnnKNYLA	BBABBABBAAALBBBBB
N	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	85.7	L3	8	L3-8-1	7	QQYYSTLT	BBAABEBB
N	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	66.7	L4	6	L4-6-1	11	GSGAEF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	76.9	H1	13	H1-13-1	13	AASGFTFRDVWMS	BBBLBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	91.7	H2	12	H2-12-1	17	RIKSKidGGTTD	BBBBAAALLBBB
O	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H3	22	H3-22-*	-1	TTAGSYYYDTvgpglpegKFDY
O	heavy	Homo.sapiens	Hu_IGHV3-15*01	100.0	Hu_IGHV3-15*01	100.0	H4	8	H4-8-1	8	RDDSKNTL	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	100.0	L1	17	L1-17-1	9	KSSQSVlyssnnKNYLA	BBABBABBAAALBBBBB
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	85.7	L3	8	L3-8-1	8	QQYYSTLT	BBAABEBB
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	66.7	L4	6	L4-6-1	16	GSGAEF	EBEABB
T	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	92.3	H1	13	H1-13-1	20	KASGFTFMSSAVQ	BBBLBBAAABBBB
T	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	90.0	H2	10	H2-10-1	8	WIVIGSGNTN	BBBAAALBBB
T	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	100.0	H3	16	H3-16-*	-1	AAPYcsSISCNDGFDI
T	heavy	Homo.sapiens	Hu_IGHV1-58*01	97.3	Hu_IGHV1-58*01	100.0	H4	8	H4-8-1	6	RDMSTSTA	BBAAALBB
U	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L1	12	L1-12-1	10	RASQSVSsSYLA	BBABBBBAAABB
U	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	7	YGASSRAT	BLLABBBB
U	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	71.4	L3	10	L3-10-*	-1	QHYGSSrGWT	BBABEABLBB
U	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

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