PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6DWI

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	72.7	L1	11	L1-11-1	7	RASQSVRTNVA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-*	-1	SGASTRAS	BLLABBBA
A	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	13	LQYNTWPRT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	83.3	L4	6	L4-6-1	6	GYGTEF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	11	AASGFTFNTNDMS	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	30.0	H2	10	H2-10-1	13	TIIGIDDTTH	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	50.0	H3	9	H3-9-*	-1	VKNSGIYSF	BBEAABBAB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	10	RDTSKNMV	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	72.7	L1	11	L1-11-1	7	RASQSVRTNVA	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-*	-1	SGASTRAS	BLLABBBA
C	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	12	LQYNTWPRT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	83.3	L4	6	L4-6-1	11	GYGTEF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	12	AASGFTFNTNDMS	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	30.0	H2	10	H2-10-1	11	TIIGIDDTTH	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	50.0	H3	9	H3-9-*	-1	VKNSGIYSF	BBEAeBBAB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	6	RDTSKNMV	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	72.7	L1	11	L1-11-1	8	RASQSVRTNVA	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-*	-1	SGASTRAS	BLLABBBA
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	13	LQYNTWPRT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	83.3	L4	6	L4-6-1	7	GYGTEF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	12	AASGFTFNTNDMS	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	30.0	H2	10	H2-10-1	13	TIIGIDDTTH	BBBAAALBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	50.0	H3	9	H3-9-*	-1	VKNSGIYSF	BBEAABBAB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	11	RDTSKNMV	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	72.7	L1	11	L1-11-1	5	RASQSVRTNVA	BBABBAEABBB
G	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-*	-1	SGASTRAS	BLLABBBA
G	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	13	LQYNTWPRT	BBAABBbBB
G	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	83.3	L4	6	L4-6-1	9	GYGTEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	12	AASGFTFNTNDMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	30.0	H2	10	H2-10-1	16	TIIGIDDTTH	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	50.0	H3	9	H3-9-*	-1	VKNSGIYSF	BBEAeBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	RDTSKNMV	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	72.7	L1	11	L1-11-1	7	RASQSVRTNVA	BBABBAEABBB
I	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-*	-1	SGASTRAS	BLLABBBA
I	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	15	LQYNTWPRT	BBAABBbBB
I	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	83.3	L4	6	L4-6-1	11	GYGTEF	EBEABB
J	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	13	AASGFTFNTNDMS	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	30.0	H2	10	H2-10-1	12	TIIGIDDTTH	BBBAAALBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	50.0	H3	9	H3-9-*	-1	VKNSGIYSF	BBEAABBAB
J	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	7	RDTSKNMV	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	72.7	L1	11	L1-11-1	12	RASQSVRTNVA	BBABBAEABBB
K	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-*	-1	SGASTRAS	BLLABBBA
K	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	16	LQYNTWPRT	BBAABBbBB
K	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	83.3	L4	6	L4-6-1	17	GYGTEF	EBEABB
L	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	17	AASGFTFNTNDMS	BBBLBBAAABBBB
L	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	30.0	H2	10	H2-10-1	18	TIIGIDDTTH	BBBAAALBBB
L	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	50.0	H3	9	H3-9-*	-1	VKNSGIYSF	BBEAABBAB
L	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	10	RDTSKNMV	BBAAALBB
M	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	72.7	L1	11	L1-11-1	6	RASQSVRTNVA	BBABBAEABBB
M	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-*	-1	SGASTRAS	BLLABBBA
M	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	13	LQYNTWPRT	BBAABBbBB
M	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	83.3	L4	6	L4-6-1	6	GYGTEF	EBEABB
N	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	13	AASGFTFNTNDMS	BBBLBBAAABBBB
N	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	30.0	H2	10	H2-10-1	11	TIIGIDDTTH	BBBAAALBBB
N	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	50.0	H3	9	H3-9-*	-1	VKNSGIYSF	BBEAABBAB
N	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	11	RDTSKNMV	BBAAALBB
O	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	72.7	L1	11	L1-11-1	7	RASQSVRTNVA	BBABBAEABBB
O	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-1	9	SGASTRAS	BLLABBBB
O	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	12	LQYNTWPRT	BBAABBbBB
O	kappa	Homo.sapiens	Hu_IGKV3-15*01	81.2	Hu_IGKV3-15*01	83.3	L4	6	L4-6-1	6	GYGTEF	EBEABB
P	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	11	AASGFTFNTNDMS	BBBLBBAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	30.0	H2	10	H2-10-1	14	TIIGIDDTTH	BBBAAALBBB
P	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	50.0	H3	9	H3-9-*	-1	VKNSGIYSF	BBEAABBAB
P	heavy	Homo.sapiens	Hu_IGHV3-23*04	82.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	6	RDTSKNMV	BBAAALBB

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