PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4ZYP

#CDRs = 8; #Clusters = 14.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	84.6	H1	13	H1-13-1	9	AASGFSFSHYAMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	80.0	H2	10	H2-10-2	6	VISYDGENTY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	100.0	H3	16	H3-16-*	-1	ARDRIVddYYYYGMDV
D	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	87.5	H4	8	H4-8-1	6	RDNSKNTV	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	81.8	L1	11	L1-11-1	5	QASQDIKKYLN	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	8	HDASNLET	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L3	10	L3-10-cis78-*	-1	QQYDNlpPLT	BBABEBBbBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	3	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	84.6	H1	13	H1-13-1	9	AASGFSFSHYAMH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	80.0	H2	10	H2-10-2	6	VISYDGENTY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	100.0	H3	16	H3-16-*	-1	ARDRIVddYYYYGMDV
F	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	87.5	H4	8	H4-8-1	6	RDNSKNTV	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	81.8	L1	11	L1-11-1	5	QASQDIKKYLN	BBABBAEABBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	8	HDASNLET	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L3	10	L3-10-*	-1	QQYDNlpPLT	BBABEBBbBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	3	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	84.6	H1	13	H1-13-1	8	AASGFSFSHYAMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	80.0	H2	10	H2-10-2	6	VISYDGENTY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	100.0	H3	16	H3-16-*	-1	ARDRIVddYYYYGMDV
H	heavy	Homo.sapiens	Hu_IGHV3-30*09	91.8	Hu_IGHV3-30*09	87.5	H4	8	H4-8-1	6	RDNSKNTV	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	81.8	L1	11	L1-11-1	5	QASQDIKKYLN	BBABBAEABBB
I	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	8	HDASNLET	BLLABBBB
I	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L3	10	L3-10-cis78-*	-1	QQYDNlpPLT	BBABEBBbBB
I	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	3	GSGTDF	EBEABB
J	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Mo_IGHV2-3*01	61.5	H1	13	H1-13-*	-1	TFSGFSLSTAGMS
J	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Mo_IGHV2-3*01	33.3	H2	9	H2-9-1	15	DIWWDDKKH	BBBAALBBB
J	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Hu_IGHV2-70*17	66.7	H3	12	H3-12-*	-1	ARDMIFNFYFDV	BBBBAABBBBAB
J	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Hu_IGHV2-70*17	100.0	H4	8	H4-8-1	10	KDTSKNQV	BBAAALBB
K	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Mo_IGHV2-3*01	61.5	H1	13	H1-13-*	-1	TFSGFSLSTAGMS
K	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Mo_IGHV2-3*01	33.3	H2	9	H2-9-1	15	DIWWDDKKH	BBBAALBBB
K	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Hu_IGHV2-70*17	66.7	H3	12	H3-12-*	-1	ARDMIFNFYFDV	BBBBAABBBBAB
K	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Hu_IGHV2-70*17	100.0	H4	8	H4-8-1	10	KDTSKNQV	BBAAALBB
L	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Mo_IGKV4-59*01	80.0	L1	10	L1-10-1	10	SASSRVGYMH	BBABBBABBB
L	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	9	YDTSKLAS	BLLABBBB
L	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Hu_IGKV1-5*03	28.6	L3	9	L3-9-cis7-1	15	FQGSGYPFT	BBAABBbBB
L	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	7	GSGTEF	EBEABB
M	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Mo_IGKV4-59*01	80.0	L1	10	L1-10-1	10	SASSRVGYMH	BBABBBABBB
M	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	9	YDTSKLAS	BLLABBBB
M	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Hu_IGKV1-5*03	28.6	L3	9	L3-9-cis7-1	11	FQGSGYPFT	BBAABBbBB
M	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	5	GSGTEF	EBEABB
N	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Mo_IGHV2-3*01	61.5	H1	13	H1-13-*	-1	TFSGFSLSTAGMS
N	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Mo_IGHV2-3*01	33.3	H2	9	H2-9-1	15	DIWWDDKKH	BBBAALBBB
N	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Hu_IGHV2-70*17	66.7	H3	12	H3-12-*	-1	ARDMIFNFYFDV	BBBBAABBBBAB
N	heavy	Mus.musculus	Hu_IGHV2-70*17	89.3	Hu_IGHV2-70*17	100.0	H4	8	H4-8-1	10	KDTSKNQV	BBAAALBB
O	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Mo_IGKV4-59*01	80.0	L1	10	L1-10-1	8	SASSRVGYMH	BBABBBABBB
O	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	6	YDTSKLAS	BLLABBBB
O	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Hu_IGKV1-5*03	28.6	L3	9	L3-9-cis7-1	9	FQGSGYPFT	BBAABBbBB
O	kappa	Mus.musculus	Hu_IGKV1-5*03	100.0	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	7	GSGTEF	EBEABB

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