PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4RAU

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	81.8	L1	11	L1-11-*	-1	SASQGINNYLS	BBABBBBLABB
A	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L2	8	L2-8-4	17	YYTSSLHS	BEAABBBB
A	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	85.7	L3	9	L3-9-cis7-1	12	QQFSKLPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L4	6	L4-6-1	10	GSGTDY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	92.3	H1	13	H1-13-1	15	AASGFAFSRYDMS	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	70.0	H2	10	H2-10-*	-1	TITSGDNYTY	BBBABLBBBB
B	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	50.0	H3	12	H3-12-*	-1	TRQGLLYYAMDY	BBBEEAALBBAB
B	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	100.0	H4	8	H4-8-1	13	RDNARNTL	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	81.8	L1	11	L1-11-*	-1	SASQGINNYLS	BBABBBBLABB
D	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L2	8	L2-8-4	17	YYTSSLHS	BEAABBBB
D	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	85.7	L3	9	L3-9-cis7-1	12	QQFSKLPYT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L4	6	L4-6-1	10	GSGTDY	EBEABB
E	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	92.3	H1	13	H1-13-1	15	AASGFAFSRYDMS	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	70.0	H2	10	H2-10-*	-1	TITSGDNYTY	BBBABLBBBB
E	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	50.0	H3	12	H3-12-*	-1	TRQGLLYYAMDY	BBBEEAALBBAB
E	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	100.0	H4	8	H4-8-1	13	RDNARNTL	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	81.8	L1	11	L1-11-*	-1	SASQGINNYLS	BBABBBBLABB
G	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L2	8	L2-8-4	13	YYTSSLHS	BEAABBBB
G	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	85.7	L3	9	L3-9-cis7-1	12	QQFSKLPYT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L4	6	L4-6-1	10	GSGTDY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	92.3	H1	13	H1-13-1	15	AASGFAFSRYDMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	70.0	H2	10	H2-10-*	-1	TITSGDNYTY	BBBABLBBBB
H	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	50.0	H3	12	H3-12-*	-1	TRQGLLYYAMDY	BBBEEAALBBAB
H	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	100.0	H4	8	H4-8-1	13	RDNARNTL	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	81.8	L1	11	L1-11-*	-1	SASQGINNYLS	BBABBBBLABB
J	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L2	8	L2-8-4	17	YYTSSLHS	BEAABBBB
J	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	85.7	L3	9	L3-9-cis7-1	12	QQFSKLPYT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L4	6	L4-6-1	10	GSGTDY	EBEABB
K	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	92.3	H1	13	H1-13-1	15	AASGFAFSRYDMS	BBBLBBAAABBBB
K	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	70.0	H2	10	H2-10-*	-1	TITSGDNYTY	BBBABLBBBB
K	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	50.0	H3	12	H3-12-*	-1	TRQGLLYYAMDY	BBBEEAAEEBAB
K	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	100.0	H4	8	H4-8-1	13	RDNARNTL	BBAAALBB
M	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	81.8	L1	11	L1-11-*	-1	SASQGINNYLS	BBABBBBLABB
M	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L2	8	L2-8-4	17	YYTSSLHS	BEAABBBB
M	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	85.7	L3	9	L3-9-cis7-1	12	QQFSKLPYT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L4	6	L4-6-1	10	GSGTDY	EBEABB
N	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	92.3	H1	13	H1-13-1	15	AASGFAFSRYDMS	BBBLBBAAABBBB
N	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	70.0	H2	10	H2-10-*	-1	TITSGDNYTY	BBBABLBBBB
N	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	50.0	H3	12	H3-12-*	-1	TRQGLLYYAMDY	BBBEEAALBBAB
N	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	100.0	H4	8	H4-8-1	13	RDNARNTL	BBAAALBB
P	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	81.8	L1	11	L1-11-*	-1	SASQGINNYLS	BBABBBBLABB
P	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L2	8	L2-8-4	16	YYTSSLHS	BEAABBBB
P	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	85.7	L3	9	L3-9-cis7-1	12	QQFSKLPYT	BBAABBbBB
P	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L4	6	L4-6-1	10	GSGTDY	EBEABB
Q	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	92.3	H1	13	H1-13-1	15	AASGFAFSRYDMS	BBBLBBAAABBBB
Q	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	70.0	H2	10	H2-10-*	-1	TITSGDNYTY	BBBABLBBBB
Q	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	50.0	H3	12	H3-12-*	-1	TRQGLLYYAMDY	BBBEEAALBBAB
Q	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	100.0	H4	8	H4-8-1	13	RDNARNTL	BBAAALBB
S	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	81.8	L1	11	L1-11-*	-1	SASQGINNYLS	BBABBBBLABB
S	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L2	8	L2-8-4	16	YYTSSLHS	BEAABBBB
S	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	85.7	L3	9	L3-9-cis7-1	12	QQFSKLPYT	BBAABBbBB
S	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L4	6	L4-6-1	10	GSGTDY	EBEABB
T	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	92.3	H1	13	H1-13-1	15	AASGFAFSRYDMS	BBBLBBAAABBBB
T	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	70.0	H2	10	H2-10-*	-1	TITSGDNYTY	BBBABABBBB
T	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	50.0	H3	12	H3-12-*	-1	TRQGLLYYAMDY	BBBEEAALBBAB
T	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	100.0	H4	8	H4-8-1	13	RDNARNTL	BBAAALBB
V	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	81.8	L1	11	L1-11-*	-1	SASQGINNYLS	BBABBBBLABB
V	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L2	8	L2-8-4	13	YYTSSLHS	BEAABBBB
V	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	85.7	L3	9	L3-9-cis7-1	12	QQFSKLPYT	BBAABBbBB
V	kappa	Mus.musculus	Mo_IGKV10-94*01	95.7	Mo_IGKV10-94*01	100.0	L4	6	L4-6-1	10	GSGTDY	EBEABB
W	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	92.3	H1	13	H1-13-1	15	AASGFAFSRYDMS	BBBLBBAAABBBB
W	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	70.0	H2	10	H2-10-*	-1	TITSGDNYTY	BBBABLBBBB
W	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	50.0	H3	12	H3-12-*	-1	TRQGLLYYAMDY	BBBEEAALBBAB
W	heavy	Mus.musculus	Mo_IGHV5-9*02	98.6	Mo_IGHV5-9*02	100.0	H4	8	H4-8-1	13	RDNARNTL	BBAAALBB

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