PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4R7N

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	50.0	H1	14	H1-14-*	-1	AVSGYPIRfGYSWH	BBBLBBAABEBBBB
A	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	10	YIHYSGYTD	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDSGNYFPY	BBAEBLLBBAB
A	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	9	RDTSKNQF	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	20	RASQSISDHLH	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BBEABBAL
B	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	28.6	L3	9	L3-9-cis7-1	11	QQGYDFPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	19	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	50.0	H1	14	H1-14-*	-1	AVSGYPIRfGYSWH	BBBLBBAABEBBBB
C	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	11	YIHYSGYTD	BBBAALBBB
C	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDSGNYFPY	BBAEBLLBBAB
C	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	10	RDTSKNQF	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	23	RASQSISDHLH	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BLaABBBB
D	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	28.6	L3	9	L3-9-cis7-1	14	QQGYDFPLT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	20	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	50.0	H1	14	H1-14-*	-1	AVSGYPIRfGYSWH	BBBLBBAABEBBBB
E	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	9	YIHYSGYTD	BBBAALBBB
E	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDSGNYFPY	BBAEBLLBBAB
E	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	9	RDTSKNQF	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	17	RASQSISDHLH	BBABBAEABBB
F	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BLaABBBB
F	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	28.6	L3	9	L3-9-cis7-1	14	QQGYDFPLT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB
G	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	50.0	H1	14	H1-14-*	-1	AVSGYPIRfGYSWH	BBBLBBAABEBBBB
G	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	8	YIHYSGYTD	BBBAALBBB
G	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDSGNYFPY	BBAEBLLBBAB
G	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	9	RDTSKNQF	BBAAALBB
H	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	20	RASQSISDHLH	BBABBAEABBB
H	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BLaABBBB
H	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	28.6	L3	9	L3-9-cis7-1	14	QQGYDFPLT	BBAABBbBB
H	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	20	GSGTDF	EBEABB
I	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	50.0	H1	14	H1-14-*	-1	AVSGYPIRfGYSWH	BBBLBBAABEBBBB
I	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	8	YIHYSGYTD	BBBAALBBB
I	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDSGNYFPY	BBAEBLLBBAB
I	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	10	RDTSKNQF	BBAAALBB
J	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-*	-1	RASQSISDHLH	BBABBBBLBBB
J	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BLaABBBB
J	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	28.6	L3	9	L3-9-cis7-1	12	QQGYDFPLT	BBAABBbBB
J	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	20	GSGTDF	EBEABB
K	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	50.0	H1	14	H1-14-*	-1	AVSGYPIRfGYSWH	BBBLBBAABEBBBB
K	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	11	YIHYSGYTD	BBBAALBBB
K	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDSGNYFPY	BBAEBLLBBAB
K	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	10	RDTSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	18	RASQSISDHLH	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BLaABBBB
L	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	28.6	L3	9	L3-9-cis7-1	13	QQGYDFPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	20	GSGTDF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	50.0	H1	14	H1-14-*	-1	AVSGYPIRfGYSWH	BBBLBBAABEBBBB
M	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	8	YIHYSGYTD	BBBAALBBB
M	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDSGNYFPY	BBAEBLLBBAB
M	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	9	RDTSKNQF	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	20	RASQSISDHLH	BBABBAEABBB
N	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BLaABBBB
N	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	28.6	L3	9	L3-9-cis7-1	12	QQGYDFPLT	BBAABBbBB
N	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	50.0	H1	14	H1-14-*	-1	AVSGYPIRfGYSWH	BBBLBBAABEBBBB
O	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	11	YIHYSGYTD	BBBAALBBB
O	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDSGNYFPY	BBAEBLLBBAB
O	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	8	RDTSKNQF	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	20	RASQSISDHLH	BBABBAEABBB
P	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BbaABBBB
P	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	28.6	L3	9	L3-9-cis7-1	11	QQGYDFPLT	BBAABBbBB
P	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB
Q	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	50.0	H1	14	H1-14-*	-1	AVSGYPIRfGYSWH	BBBLBBAABEBBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	20	YIHYSGYTD	BBBABLBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDSGNYFPY	BBAEBLLBBAB
Q	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	10	RDTSKNQF	BBAAALBB
R	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	21	RASQSISDHLH	BBABBAEABBB
R	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BLbABBBB
R	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	28.6	L3	9	L3-9-cis7-*	-1	QQGYDFPLT	BBBBBBbBB
R	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-3	22	GSGTDF	BBAABB
S	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	50.0	H1	14	H1-14-*	-1	AVSGYPIRfGYSWH	BBBLBBAABEBBBB
S	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-*	-1	YIHYSGYTD	BBBABABBB
S	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDSGNYFPY	BBAEBLLBBAB
S	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	10	RDTSKNQF	BBAAALBB
T	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	19	RASQSISDHLH	BBABBAEABBB
T	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BLbABBAL
T	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	28.6	L3	9	L3-9-cis7-1	12	QQGYDFPLT	BBAABBbBB
T	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	20	GSGTDF	EBEABB

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