PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4R7D

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	57.1	H1	14	H1-14-1	7	AVSGYSITgGYSWH	BBBLBBAAAEEBBB
A	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	12	YIHYSGYTD	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDPSDAFPY	BBBBAAbBBAB
A	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	7	RDTSKNQF	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	20	RASQSISDHLH	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BLaABBBB
B	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	42.9	L3	9	L3-9-cis7-1	9	QQGHSFPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	57.1	H1	14	H1-14-1	12	AVSGYSITgGYSWH	BBBLBBAAABEBBB
C	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	10	YIHYSGYTD	BBBAALBBB
C	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDPSDAFPY	BBBBAAbBBAB
C	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	7	RDTSKNQF	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	9	RASQSISDHLH	BBABBAEAABB
D	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BLBaBBBB
D	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	42.9	L3	9	L3-9-cis7-1	18	QQGHSFPLT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	57.1	H1	14	H1-14-*	-1	AVSGYSITgGYSWH	BBBLBALABLBBBB
E	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	12	YIHYSGYTD	BBBAALBBB
E	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-1	14	ARKDPSDAFPY	BBBBAALBBAB
E	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	9	RDTSKNQF	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-2	11	RASQSISDHLH	BBABBALLBBB
F	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-1	10	KYASHAIS	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	42.9	L3	9	L3-9-cis7-1	13	QQGHSFPLT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
G	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	57.1	H1	14	H1-14-1	11	AVSGYSITgGYSWH	BBBLBBAAAEEBBB
G	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	8	YIHYSGYTD	BBBAALBBB
G	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDPSDAFPY	BBBBAAbBBAB
G	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	9	RDTSKNQF	BBAAALBB
H	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	7	RASQSISDHLH	BBABBAEABBB
H	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-1	19	KYASHAIS	BLLABBBB
H	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	42.9	L3	9	L3-9-cis7-1	6	QQGHSFPLT	BBAABBbBB
H	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
I	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	57.1	H1	14	H1-14-*	-1	AVSGYSITgGYSWH	BBBLBBAAAaEBBB
I	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	16	YIHYSGYTD	BBBAALBBB
I	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDPSDAFPY	BBBBAAbBBAB
I	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	9	RDTSKNQF	BBAAALBB
J	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	16	RASQSISDHLH	BBABBAEABBB
J	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	BLaABBBB
J	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	42.9	L3	9	L3-9-cis7-1	11	QQGHSFPLT	BBAABBbBB
J	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
K	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	57.1	H1	14	H1-14-1	8	AVSGYSITgGYSWH	BBBLBBAAABEBBB
K	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	13	YIHYSGYTD	BBBAALBBB
K	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-1	11	ARKDPSDAFPY	BBBBAALBBAB
K	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	7	RDTSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-2	8	RASQSISDHLH	BBABBALLBBB
L	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-1	21	KYASHAIS	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	42.9	L3	9	L3-9-cis7-1	13	QQGHSFPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	57.1	H1	14	H1-14-*	-1	AVSGYSITgGYSWH	BBBLBBABLBBBBB
M	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	15	YIHYSGYTD	BBBAALBBB
M	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDPSDAFPY	BBBBAAbBBAB
M	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	8	RDTSKNQF	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-*	-1	RASQSISDHLH	BBABBBAABBB
N	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-*	-1	KYASHAIS	ABLABBBB
N	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	42.9	L3	9	L3-9-cis7-1	17	QQGHSFPLT	BBAABBbBB
N	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	57.1	H1	14	H1-14-1	11	AVSGYSITgGYSWH	BBBLBBAAAEEBBB
O	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	H2	9	H2-9-1	12	YIHYSGYTD	BBBAALBBB
O	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	100.0	H3	11	H3-11-*	-1	ARKDPSDAFPY	BBBBAAbBBAB
O	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	87.5	H4	8	H4-8-1	12	RDTSKNQF	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	72.7	L1	11	L1-11-1	16	RASQSISDHLH	BBABBAEABBB
P	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	75.0	L2	8	L2-8-1	17	KYASHAIS	BLLABBBB
P	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	42.9	L3	9	L3-9-cis7-1	10	QQGHSFPLT	BBAABBbBB
P	kappa	Homo.sapiens	Hu_IGKV6-21*02	100.0	Hu_IGKV6-21*02	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

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