PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4R4N

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-*	-1	GVYGESLSGHYWS
C	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBABBLBBB
C	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBBAaBBbBEb
C	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	15	LDMSKNQF	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	8	RASQGISSYLA	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	6	YAASTLQS	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	9	GSGTEF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-*	-1	GVYGESLSGHYWS
F	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-1	25	EIKHNGSPN	BBBAALBBB
F	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBBAaBBbBBb
F	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	15	LDMSKNQF	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	8	RASQGISSYLA	BBABBAEABBB
G	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	6	YAASTLQS	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
G	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	8	GSGTEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-*	-1	GVYGESLSGHYWS
H	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBABBLBBB
H	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBBBaBABBBb
H	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	15	LDMSKNQF	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-*	-1	GVYGESLSGHYWS
J	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-1	21	EIKHNGSPN	BBBAALBBB
J	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBBAaBBbBEb
J	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	15	LDMSKNQF	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	10	RASQGISSYLA	BBABBAEABBB
K	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	6	YAASTLQS	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
K	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	8	GSGTEF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	8	RASQGISSYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	6	YAASTLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	8	GSGTEF	EBEABB
N	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-*	-1	GVYGESLSGHYWS
N	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBBAABBBB
N	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBBBaBABBBb
N	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	15	LDMSKNQF	BBAAALBB
O	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	7	RASQGISSYLA	BBABBAEABBB
O	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	6	YAASTLQS	BLLABBBB
O	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
O	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	8	GSGTEF	EBEABB
Q	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-*	-1	GVYGESLSGHYWS
Q	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBABBLBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBBBaBABBBb
Q	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	15	LDMSKNQF	BBAAALBB
R	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	8	RASQGISSYLA	BBABBAEABBB
R	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	6	YAASTLQS	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
R	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	8	GSGTEF	EBEABB
T	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-*	-1	GVYGESLSGHYWS
T	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-1	22	EIKHNGSPN	BBBAALBBB
T	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBBAaBBbBBb
T	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	15	LDMSKNQF	BBAAALBB
U	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	7	RASQGISSYLA	BBABBAEABBB
U	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	6	YAASTLQS	BLLABBBB
U	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
U	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	8	GSGTEF	EBEABB
W	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-*	-1	GVYGESLSGHYWS
W	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBABBLBBB
W	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBBBaBABBBb
W	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	17	LDMSKNQF	BBAAALBB
X	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	8	RASQGISSYLA	BBABBAEABBB
X	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	6	YAASTLQS	BLLABBBB
X	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
X	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	8	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024