PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4NHH

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	38.5	H1	13	H1-13-1	18	GVSNFRISAHTMN	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	SISSSTYRD
E	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	100.0	H3	10	H3-10-*	-1	ARKGSDRLDA
E	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	25.0	H4	8	H4-8-1	9	RDDLEDFV	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-1	3	RASQSIETWLA	BBABBAEABBB
F	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	7	YKASTLKT	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	16	QHYAGYSAT	BBBBAABBB
F	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	4	GSGTEF	EBEABB
G	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-1	4	RASQSIETWLA	BBABBAEABBB
G	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	7	YKASTLKT	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	16	QHYAGYSAT	BBBBAABBB
G	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	3	GSGTEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	38.5	H1	13	H1-13-1	18	GVSNFRISAHTMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	SISSSTYRD
H	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	100.0	H3	10	H3-10-*	-1	ARKGSDRLDA
H	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	25.0	H4	8	H4-8-1	9	RDDLEDFV	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	38.5	H1	13	H1-13-1	17	GVSNFRISAHTMN	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	SISSSTYRD
I	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	100.0	H3	10	H3-10-*	-1	ARKGSDRLdA
I	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	25.0	H4	8	H4-8-1	10	RDDLEDFV	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-1	3	RASQSIETWLA	BBABBAEABBB
K	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	7	YKASTLKT	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	16	QHYAGYSAT	BBBBAABBB
K	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	4	GSGTEF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-1	4	RASQSIETWLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	7	YKASTLKT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	16	QHYAGYSAT	BBBBAABBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	3	GSGTEF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	38.5	H1	13	H1-13-1	17	GVSNFRISAHTMN	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	SISSSTYRD
M	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	100.0	H3	10	H3-10-*	-1	ARKGSDRLDA
M	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	25.0	H4	8	H4-8-1	10	RDDLEDFV	BBAAALBB
O	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	38.5	H1	13	H1-13-1	18	GVSNFRISAHTMN	BBBLBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	SISSSTYRD
O	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	100.0	H3	10	H3-10-*	-1	ARKGSDRLDA
O	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	25.0	H4	8	H4-8-1	9	RDDLEDFV	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-1	3	RASQSIETWLA	BBABBAEABBB
P	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	7	YKASTLKT	BLLABBBB
P	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	16	QHYAGYSAT	BBBBAABBB
P	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	4	GSGTEF	EBEABB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-1	4	RASQSIETWLA	BBABBAEABBB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	7	YKASTLKT	BLLABBBB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	16	QHYAGYSAT	BBBBAABBB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	3	GSGTEF	EBEABB
R	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	38.5	H1	13	H1-13-1	17	GVSNFRISAHTMN	BBBLBBAAABBBB
R	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	SISSSTYRD
R	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	100.0	H3	10	H3-10-*	-1	ARKGSDRLDA
R	heavy	Homo.sapiens	Hu_IGHV3-21*05	74.0	Hu_IGHV3-21*05	25.0	H4	8	H4-8-1	10	RDDLEDFV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024