PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4D9L

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	76.9	H1	13	H1-13-*	-1	KASGGNFNTYTIS	BBBEEBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	80.0	H2	10	H2-10-1	15	RIIPIFGIVN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	50.0	H3	14	H3-14-*	-1	ATSGVGLHFGYFDY	BBBBBEABBBBBAB
H	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	75.0	H4	8	H4-8-1	12	VDKSTNTA	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	76.9	H1	13	H1-13-1	19	KASGGNFNTYTIS	BBBLEBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	80.0	H2	10	H2-10-1	14	RIIPIFGIVN	BBBAAALBBB
I	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	50.0	H3	14	H3-14-*	-1	ATSGVGLHFGYFDY	BBBBBEABBBBBAB
I	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	75.0	H4	8	H4-8-1	10	VDKSTNTA	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	76.9	H1	13	H1-13-1	20	KASGGNFNTYTIS	BBBLEBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	80.0	H2	10	H2-10-1	19	RIIPIFGIVN	BBBAAALBBB
J	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	50.0	H3	14	H3-14-*	-1	ATSGVGLHFGYFDY	BBBBBEABBBBBAB
J	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	75.0	H4	8	H4-8-1	8	VDKSTNTA	BBAAALBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	76.9	H1	13	H1-13-1	21	KASGGNFNTYTIS	BBBLEBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	80.0	H2	10	H2-10-1	18	RIIPIFGIVN	BBBAAALBBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	50.0	H3	14	H3-14-*	-1	ATSGVGLHFGYFDY	BBBBBEABBBBBAB
K	heavy	Homo.sapiens	Hu_IGHV1-69*02	93.2	Hu_IGHV1-69*02	75.0	H4	8	H4-8-1	11	VDKSTNTA	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	92.9	L1	14	L1-14-*	-1	TGSSSNIGAHYdVH	BBBAAAAeALBBBB
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L2	8	L2-8-1	7	YGNSNRPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L3	11	L3-11-1	16	QSYDSSLSGYV	BBBBAAALBBB
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	12	KSGTSA	BBEABB
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	92.9	L1	14	L1-14-3	12	TGSSSNIGAHYdVH	BBBAAAAAALBBBB
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L2	8	L2-8-1	8	YGNSNRPS	BLLABBBB
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L3	11	L3-11-1	15	QSYDSSLSGYV	BBBBAAALBBB
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	14	KSGTSA	BBEABB
N	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	92.9	L1	14	L1-14-3	11	TGSSSNIGAHYdVH	BBBAAAAAALBBBB
N	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L2	8	L2-8-1	9	YGNSNRPS	BLLABBBB
N	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L3	11	L3-11-1	15	QSYDSSLSGYV	BBBBAAALBBB
N	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	16	KSGTSA	BBEABB
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	92.9	L1	14	L1-14-3	12	TGSSSNIGAHYdVH	BBBAAAAAALBBBB
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L2	8	L2-8-1	8	YGNSNRPS	BLLABBBB
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L3	11	L3-11-1	17	QSYDSSLSGYV	BBBBAAALBBB
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	13	KSGTSA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024