PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3J8V

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
F	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H1	13	H1-13-1	9	KASGYAFSSYWMN	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	90.0	H2	10	H2-10-1	14	QIYPGDGATN	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H3	15	H3-15-*	-1	ARPYRYdGGVYAMDY
F	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H4	8	H4-8-1	10	ADKSSSTA	BBAAALBB
G	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H1	13	H1-13-1	9	KASGYAFSSYWMN	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	90.0	H2	10	H2-10-1	14	QIYPGDGATN	BBBAAALBBB
G	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H3	15	H3-15-*	-1	ARPYRYdGGVYAMDY
G	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H4	8	H4-8-1	10	ADKSSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H1	13	H1-13-1	9	KASGYAFSSYWMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	90.0	H2	10	H2-10-1	14	QIYPGDGATN	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H3	15	H3-15-*	-1	ARPYRYdGGVYAMDY
H	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H4	8	H4-8-1	10	ADKSSSTA	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H1	13	H1-13-1	9	KASGYAFSSYWMN	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	90.0	H2	10	H2-10-1	14	QIYPGDGATN	BBBAAALBBB
I	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H3	15	H3-15-*	-1	ARPYRYdGGVYAMDY
I	heavy	Mus.musculus	Mo_IGHV1-80*01	93.0	Mo_IGHV1-80*01	100.0	H4	8	H4-8-1	10	ADKSSSTA	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L1	11	L1-11-2	6	KASDHINNWLA	BBABBALLBBB
J	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L2	8	L2-8-1	7	SGATSLET	BLLABBBB
J	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L3	9	L3-9-cis7-1	5	QQYWSTPLT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	83.3	L4	6	L4-6-1	7	GSGKDF	EBEABB
K	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L1	11	L1-11-2	6	KASDHINNWLA	BBABBALLBBB
K	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L2	8	L2-8-1	7	SGATSLET	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L3	9	L3-9-cis7-1	5	QQYWSTPLT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	83.3	L4	6	L4-6-1	7	GSGKDF	EBEABB
L	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L1	11	L1-11-2	6	KASDHINNWLA	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L2	8	L2-8-1	7	SGATSLET	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L3	9	L3-9-cis7-1	5	QQYWSTPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	83.3	L4	6	L4-6-1	7	GSGKDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L1	11	L1-11-2	6	KASDHINNWLA	BBABBALLBBB
M	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L2	8	L2-8-1	7	SGATSLET	BLLABBBB
M	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	100.0	L3	9	L3-9-cis7-1	5	QQYWSTPLT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV13-85*01	94.2	Mo_IGKV13-85*01	83.3	L4	6	L4-6-1	7	GSGKDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024