PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2QR0

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	17	RASQSVSSAVA	BBABBAEBBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	11	YSASSLYS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYSyyYYPFT	BBBLBBEBABB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSGTDF	BBLLBB
B	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	69.2	H1	13	H1-13-1	22	AASGFNFSSSSIH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	40.0	H2	10	H2-10-1	19	YIYPSYSYTS	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	11	H3-11-*	-1	ARYYGTGAMDY	BBBBBLEEBAB
B	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	14	ADTSKNTA	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	17	RASQSVSSAVA	BBABBAEBBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	11	YSASSLYS	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYSyyYYPFT	BBBEBAABABB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSGTDF	BBLLBB
F	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	69.2	H1	13	H1-13-1	22	AASGFNFSSSSIH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	40.0	H2	10	H2-10-1	19	YIYPSYSYTS	BBBAAALBBB
F	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	11	H3-11-*	-1	ARYYGTGAMDY	BBBBBLEEBAB
F	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	14	ADTSKNTA	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	17	RASQSVSSAVA	BBABBAEBBBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	11	YSASSLYS	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYSyyYYPFT	BBBLBAABABB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSGTDF	BBLLBB
H	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	69.2	H1	13	H1-13-1	22	AASGFNFSSSSIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	40.0	H2	10	H2-10-1	19	YIYPSYSYTS	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	11	H3-11-*	-1	ARYYGTGAMDY	BBBBBLEEBAB
H	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	14	ADTSKNTA	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	17	RASQSVSSAVA	BBABBAEBBBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	11	YSASSLYS	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYSyyYYPFT	BBBLBAABABB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSGTDF	BBLLBB
L	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	69.2	H1	13	H1-13-1	22	AASGFNFSSSSIH	BBBLBBAAABBBB
L	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	40.0	H2	10	H2-10-1	19	YIYPSYSYTS	BBBAAALBBB
L	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	11	H3-11-*	-1	ARYYGTGAMDY	BBBBBLEEBAB
L	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	14	ADTSKNTA	BBAAALBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	17	RASQSVSSAVA	BBABBAEBBBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	11	YSASSLYS	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYSyyYYPFT	BBBLBBABABB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSGTDF	BBLLBB
N	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	69.2	H1	13	H1-13-1	22	AASGFNFSSSSIH	BBBLBBAAABBBB
N	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	40.0	H2	10	H2-10-1	19	YIYPSYSYTS	BBBAAALBBB
N	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	11	H3-11-*	-1	ARYYGTGAMDY	BBBBBLEEBAB
N	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	14	ADTSKNTA	BBAAALBB
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	17	RASQSVSSAVA	BBABBAEBBBB
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	11	YSASSLYS	BLLABBBB
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYSyyYYPFT	BBBEBBABABB
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSGTDF	BBLLBB
R	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	69.2	H1	13	H1-13-1	22	AASGFNFSSSSIH	BBBLBBAAABBBB
R	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	40.0	H2	10	H2-10-1	19	YIYPSYSYTS	BBBAAALBBB
R	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	11	H3-11-*	-1	ARYYGTGAMDY	BBBBBLEEBAB
R	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	14	ADTSKNTA	BBAAALBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	17	RASQSVSSAVA	BBABBAEBBBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	11	YSASSLYS	BLLABBBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYSyyYYPFT	BBALBAABABB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSGTDF	BBLLBB
T	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	69.2	H1	13	H1-13-1	22	AASGFNFSSSSIH	BBBLBBAAABBBB
T	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	40.0	H2	10	H2-10-1	19	YIYPSYSYTS	BBBAAALBBB
T	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	11	H3-11-*	-1	ARYYGTGAMDY	BBBBBLEEBAB
T	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	14	ADTSKNTA	BBAAALBB
W	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	17	RASQSVSSAVA	BBABBAEBBBB
W	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	12	YSASSLYS	BLLABBBB
W	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYSyyYYPFT	BBBEBAABABB
W	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSGTDF	BBLLBB
X	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	69.2	H1	13	H1-13-1	21	AASGFNFSSSSIH	BBBLBBAAABBBB
X	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	40.0	H2	10	H2-10-1	19	YIYPSYSYTS	BBBAAALBBB
X	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	11	H3-11-*	-1	ARYYGTGAMDY	BBBBBLEEBAB
X	heavy	Homo.sapiens	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	14	ADTSKNTA	BBAAALBB

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