Protein Common Interface Database

Clusters with M>=5,SeqId<90 and pair Pfam Architecture

Pfam Architecture	Cluster#	#CFs/Cluster	#Entries/Cluster	#CFs/Group	#Entries/Group	Minimum Seq Identity	Surface Area	In PDBBA(%)	In PISABA(%)	CFs Cluster/Group(%)
(Ras);(RhoGEF)_(PH)	1	7	7	8	8	19	1479	100	100	88
(GDNF)_(GDNF);(TGF_beta)	1	7	7	7	7	15	744	100	71	100
(GDNF)_(GDNF)_(GDNF);(RET_CLD1)_(Cadherin)_(RET_CLD3)_(RET_C LD4)	1	5	5	7	7	34	933	100	20	71
(GDNF)_(GDNF)_(GDNF);(TGF_beta)	1	5	5	7	7	42	832	100	40	71
(CI-B14_5a);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_F e4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	6	6	7	7	86	460	100	33	86
(Proton_antipo_M);(Proton_antipo_N)_(Proton_antipo_M)	1	7	12	7	12	19	1718	100	58	100
(C1-set);(MHC_I)_(C1-set)	1	540	1150	563	1258	10	1065	99	91	96
(C1-set);(MHC_I)_(C1-set)	2	86	219	563	1258	14	462	24	24	15
(C1-set);(MHC_I)_(C1-set)	3	51	76	563	1258	12	529	16	12	9
(C1-set);(MHC_I)_(C1-set)	4	29	64	563	1258	83	263	0	0	5
(C1-set);(MHC_I)_(C1-set)	5	18	59	563	1258	83	227	2	0	3
(C1-set);(MHC_I)_(C1-set)	6	17	24	563	1258	89	342	0	0	3
(C1-set);(MHC_I)_(C1-set)	8	13	19	563	1258	68	365	16	16	2
(C1-set);(MHC_I)_(C1-set)	9	12	18	563	1258	65	236	0	0	2
(C1-set);(MHC_I)_(C1-set)	10	11	34	563	1258	83	531	3	6	2
(C1-set);(MHC_I)_(C1-set)	11	10	17	563	1258	67	288	6	6	2
(C1-set);(MHC_I)_(C1-set)	12	7	12	563	1258	22	308	0	8	1
(C1-set);(MHC_I)_(C1-set)	13	7	8	563	1258	39	258	0	12	1
(C1-set);(MHC_I)_(C1-set)	14	7	8	563	1258	69	270	0	12	1
(C1-set);(MHC_I)_(C1-set)	15	7	9	563	1258	65	375	22	22	1
(DAP3);(MRP-L46)	1	16	16	18	18	85	299	100	0	89
(C1-set);(MHC_I)_(C1-set)	16	6	8	563	1258	43	296	25	50	1
(C1-set);(MHC_I)_(C1-set)	17	6	8	563	1258	42	307	0	0	1
(DAP3);(Ribosomal_S11)	1	5	5	5	5	4	492	100	0	100
(L51_S25_CI-B8);(Ribosomal_L4)	1	5	5	5	5	3	1530	100	0	100
(MRP-S27);(Ribosomal_L19)	1	14	14	14	14	81	529	100	0	100
(MRP-S28);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	7	7	30	1496	86	0	100
(MRP-S32);(TGS)_(tRNA_SAD)	1	17	17	17	17	73	398	100	6	100
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	2	15	15	33	34	84	591	100	7	45
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	3	15	15	33	34	84	607	100	7	45
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	4	13	13	33	34	84	425	100	8	39
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	5	13	13	33	34	84	346	100	8	39
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	6	12	12	33	34	84	298	100	8	36
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	7	11	11	33	34	84	332	100	9	33
(Ribosomal_L21p);(Ribosomal_L30)	1	9	9	9	9	31	642	89	11	100
(Ribosomal_S10);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	7	7	36	1513	86	0	100
(Ribosomal_S11);(Ribosomal_S9)	1	6	6	6	6	4	1264	100	0	100
(GP41);(V-set_2)_(C1-set)	1	14	24	36	61	76	353	100	42	39
(GP41);(V-set_2)_(C1-set)	2	8	12	36	61	0	630	100	92	22
(A2M_recep)_(NTR);(MG1)_(MG2)_(MG3)_(MG4)_(A2M_BRD)	1	8	12	8	12	25	756	100	100	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L10)_(RL10P_insert)	1	11	11	11	11	56	568	100	0	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_S30)	1	10	10	16	16	58	271	100	0	62
(AAA)_(Cdc6_C);(AAA_16)_(ORC4_C)	2	6	6	13	13	46	2180	100	33	46
(AAA)_(Cdc6_C);(AAA_16)_(ORC5_C)	2	6	6	13	13	34	458	100	33	46
(AAA_16)_(ORC4_C);(AAA_16)_(ORC5_C)	1	24	24	24	24	10	2674	100	8	100
(AAA_16)_(ORC4_C);(ORC3_N)_(ORC3_ins)_(ORC_WH_C)	1	16	16	17	17	11	279	100	6	94
(AAA_16)_(ORC5_C);(ORC2)	1	23	23	23	23	21	883	100	4	100
(AAA_16)_(ORC5_C);(ORC3_N)_(ORC3_ins)_(ORC_WH_C)	1	18	18	18	18	11	1823	100	6	100
(ORC3_N)_(ORC3_ins)_(ORC_WH_C);(ORC6)	1	7	7	8	8	0	676	100	0	88
(BCAS2);(Myb_DNA-binding)_(Myb_DNA-binding)_(Myb_Cef)	1	11	11	11	11	25	1747	100	18	100
(Cwf_Cwc_15);(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EF G_IV)_(EFG_C)	1	12	12	12	12	43	566	100	8	100
(Cwf_Cwc_15);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-s nRNA_bdg)_(PRP8_domainIV)_(JAB)_(PROCT)	1	18	18	18	18	22	1596	100	17	100
(Cwf_Cwc_15);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )	1	15	15	15	15	3	1400	100	13	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(LSM)	1	34	34	34	34	34	490	100	18	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_bdg)_(P RP8_domainIV)_(JAB)_(PROCT)	1	17	17	17	17	34	5834	100	12	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	16	16	16	16	45	994	100	19	100
(G10);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_bd g)_(PRP8_domainIV)_(JAB)_(PROCT)	1	13	13	13	13	54	1461	100	15	100
(G10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	2	11	11	26	26	42	910	100	9	42
(Pro_isomerase);(SKIP_SNW)	1	10	10	10	10	3	968	100	10	100
(Pro_isomerase);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	11	11	11	11	42	732	100	9	100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	12	12	20	20	42	794	100	8	60
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	18	18	18	18	2	1245	100	17	100
(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(WD40)	1	10	10	10	10	42	930	100	0	100
(HECT);(ubiquitin)	1	7	7	13	14	51	854	86	86	54
(HECT);(ubiquitin)	2	5	6	13	14	46	746	100	33	38
(cwf21);(MIF4G)_(MA3)	1	8	8	8	8	0	339	100	0	100
(cwf21);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_ bdg)_(PRP8_domainIV)_(JAB)_(PROCT)	1	14	14	14	14	0	1196	100	14	100
(Isy1);(Saf4_Yju2)	1	7	7	7	7	3	758	100	0	100
(MIF4G)_(MA3);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6- snRNA_bdg)_(PRP8_domainIV)_(JAB)_(PROCT)	1	5	5	5	5	28	1919	100	20	100
(RRM_1);(SKIP_SNW)	1	17	17	17	17	21	1283	100	0	100
(G10);(RRM_1)	1	6	6	7	7	21	213	100	0	86
(eIF-6);(NOG1_N)_(NOG1)_(NOGCT)	1	12	12	12	12	46	2319	100	17	100
(eIF-6);(Ribosomal_L14)	1	38	38	38	38	60	833	100	37	100
(eIF-6);(Ribosomal_L24e)	1	9	9	10	10	23	459	100	33	90
(eIF-6);(Ribosomal_L3)	1	22	22	22	22	61	253	100	32	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L34e)	1	5	5	5	5	84	464	100	0	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L7Ae)	1	5	5	5	5	71	465	100	0	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L19e)	1	9	9	9	9	46	377	100	11	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L22)	1	8	8	8	8	46	533	100	12	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L22e)	1	10	10	10	10	46	883	100	10	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L24e)	1	5	5	5	5	46	2380	100	0	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L3)	1	12	12	12	12	46	638	100	17	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L31e)	1	10	10	10	10	46	316	100	10	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L39)	1	10	10	10	10	46	919	100	10	100
(Peptidase_M24);(Ribosomal_L23eN)_(Ribosomal_L23)	1	20	20	20	20	26	504	100	30	100
(Ribosomal_L1);(Ribosomal_L36e)	1	10	10	20	20	25	336	100	10	50
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)	1	21	34	23	36	8	342	0	0	91
(NGP1NT)_(MMR_HSR1);(NOG1_N)_(NOG1)_(NOGCT)	1	6	6	6	6	46	1216	100	17	100
(Ribosomal_L7Ae);(WD40)_(WD40)	1	21	21	21	21	33	467	100	5	100
(AARP2CN)_(RIBIOP_C);(Ribosom_S12_S23)	1	6	6	6	6	30	670	100	83	100
(Ribosomal_L7Ae);(S4)	1	18	18	18	18	61	256	100	6	100
(KH_8)_(KH_1);(Ribosomal_S11)	1	17	17	17	17	50	930	100	29	100
(Brix);(MMR_HSR1)_(AARP2CN)_(RIBIOP_C)	1	12	12	12	12	49	261	100	0	100
(Brix);(Mpp10)	1	25	25	27	27	32	1362	100	4	93
(Brix);(Nop14)	1	13	13	13	13	24	993	100	0	100
(Brix);(Ribosomal_S9)	1	22	22	22	22	58	312	100	5	100
(Brix);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)	1	16	16	16	16	55	338	100	6	100
(CBF);(EMG1)	1	13	13	15	15	67	386	100	0	87
(CBF);(Ribosomal_S13)	1	9	9	9	9	35	347	100	0	100
(CBF);(WD40)_(Utp12)	1	14	14	14	14	67	892	100	0	100
(CBF);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)	1	15	15	15	15	30	608	100	0	100
(DUF1726)_(Helicase_RecD)_(GNAT_acetyltr_2)_(tRNA_bind_2);(P ALB2_WD40)_(NUC153)	1	12	12	12	12	43	525	100	0	100
(DUF1726)_(Helicase_RecD)_(GNAT_acetyltr_2)_(tRNA_bind_2);(R ibosomal_S6e)	1	9	9	9	9	63	384	100	0	100
(EMG1);(Nop14)	1	22	22	22	22	24	1159	100	5	100
(EMG1);(Ribosomal_S7)	1	21	21	21	21	69	384	100	5	100
(Fcf1);(Fibrillarin)	1	24	24	24	24	53	670	100	4	100
(Fcf1);(Ribosomal_S8)	1	23	23	23	23	52	364	100	4	100
(Fcf1);(S4)	1	27	27	27	27	52	847	100	4	100
(Fcf1);(Sas10_Utp3)_(Sas10)	1	24	24	24	24	30	679	100	4	100
(Fcf1);(WD40)_(WD40)_(WD40)_(Sof1)	1	20	20	20	20	49	564	100	5	100
(Fcf1);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)	1	10	10	10	10	53	258	100	10	100
(Fcf2);(Fibrillarin)	1	23	23	23	23	30	1460	100	4	100
(Fcf2);(MMR_HSR1)_(AARP2CN)_(RIBIOP_C)	1	12	12	12	12	31	1176	100	8	100
(Fcf2);(Sas10_Utp3)_(Sas10)	1	16	16	16	16	30	278	100	6	100
(Fcf2);(U3_assoc_6)_(TPR_14)	1	15	15	15	15	74	989	100	0	100
(Fibrillarin);(NOP5NT)_(Nop)	1	26	26	26	26	39	1319	100	4	100
(Fibrillarin);(Sas10_Utp3)_(Sas10)	1	23	23	23	23	30	1094	100	4	100
(Fibrillarin);(Utp11)	1	22	22	22	22	29	998	100	5	100
(Ge1_WD40)_(WD40)_(BING4CT);(U3_assoc_6)_(TPR_14)	1	14	14	14	14	74	388	100	0	100
(KH_8);(Ribosomal_S11)	1	18	18	21	21	69	860	100	6	86
(KH_8);(Ribosomal_S3Ae)	1	11	11	11	11	69	406	100	9	100
(KH_8);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)	1	9	9	9	9	55	323	100	11	100
(KH_8);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)	2	9	9	9	9	45	382	100	11	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Mpp10)	1	24	24	24	24	32	1827	100	4	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Ribosom_S12_S23)	1	27	27	27	27	49	1252	100	4	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(RTC)_(RTC_insert)_(RTC)	1	28	28	28	28	37	2704	100	4	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Sas10_Utp3)_(Sas10)	1	17	17	17	17	31	713	100	6	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Utp11)	1	14	14	14	14	29	2451	100	7	100
(Mpp10);(Nop14)	1	10	10	10	10	32	615	100	0	100
(Mpp10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	16	16	23	23	32	1586	100	6	70
(Mpp10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(Utp12)	2	15	15	23	23	32	1011	100	7	65
(Nop14);(Ribosom_S12_S23)	1	19	19	19	19	24	625	100	5	100
(Nop14);(Ribosomal_S13)	1	9	9	9	9	75	506	100	0	100
(Nop14);(RTC)_(RTC_insert)_(RTC)	1	17	17	17	17	24	763	100	6	100
(NOP5NT)_(Nop);(Ribosomal_L7Ae)	1	26	26	26	26	39	502	100	4	100
(NOP5NT)_(Nop);(U3_assoc_6)_(TPR_14)	1	23	23	23	23	24	768	100	4	100
(NOP5NT)_(Nop);(U3snoRNP10)_(HEAT)_(BP28CT)	1	6	6	6	6	24	734	100	17	100
(NOP5NT)_(Nop);(Utp11)	1	18	18	18	18	29	278	100	6	100
(NOP5NT)_(Nop);(Utp14)	1	21	21	21	21	28	592	100	5	100
(NOP5NT)_(Nop);(WD40)_(WD40)	1	19	19	19	19	33	415	100	5	100
(NOP5NT)_(Nop);(WD40)_(WD40)_(WD40)_(Sof1)	1	23	23	23	23	49	902	100	4	100
(Nrap)_(Nrap_D2)_(Nrap_D3)_(Nrap_D4)_(Nrap_D5)_(Nrap_D6);(Ri bosomal_S3Ae)	1	18	18	18	18	27	1081	100	0	100
(Nrap)_(Nrap_D2)_(Nrap_D3)_(Nrap_D4)_(Nrap_D5)_(Nrap_D6);(RR M_Rrp7)_(RRP7)	1	23	23	23	23	25	2522	100	4	100
(PALB2_WD40)_(NUC153);(Ribosomal_S6e)	1	14	14	14	14	43	686	100	0	100
(PALB2_WD40)_(NUC153);(Ribosomal_S8e)	1	14	14	14	14	43	759	100	0	100
(Ribosomal_L1);(RRT14)	1	7	7	7	7	63	977	100	0	100
(Ribosomal_L7Ae);(Utp11)	1	17	17	17	17	29	592	100	6	100
(Ribosomal_S13);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)	1	15	15	15	15	30	491	100	7	100
(Ribosomal_S24e);(Ribosomal_S4)_(S4)	1	9	9	9	9	31	258	100	22	100
(Ribosomal_S28e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	22	22	22	22	44	607	100	5	100
(Ribosomal_S7);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)	1	20	20	20	20	30	509	100	5	100
(Ribosomal_S7);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	14	14	14	14	55	234	100	7	100
(Ribosomal_S7e);(Utp14)	1	14	14	14	14	30	308	100	7	100
(Ribosomal_S7e);(WD40)_(WD40)_(WD40)_(Sof1)	1	19	19	19	19	49	417	100	5	100
(Ribosomal_S8);(WD40)_(WD40)_(WD40)_(Sof1)	1	19	19	19	19	49	441	100	5	100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	21	21	21	21	55	512	100	5	100
(RTC)_(RTC_insert)_(RTC);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_ (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	21	21	21	21	37	473	100	5	100
(S4);(Sas10_Utp3)_(Sas10)	1	22	22	22	22	30	432	100	5	100
(U3_assoc_6)_(TPR_14);(Utp14)	1	21	21	21	21	24	1182	100	5	100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)	1	20	20	20	20	2	565	100	5	100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)_(WD40)_(Sof1)	1	20	20	20	20	24	383	100	5	100
(U3_snoRNA_assoc);(Utp11)	1	21	21	21	21	23	600	100	5	100
(U3_snoRNA_assoc);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	16	16	16	16	88	1233	100	0	100
(U3snoRNP10)_(HEAT)_(BP28CT);(WD40)_(WD40)	1	7	7	7	7	24	1274	100	14	100
(U3snoRNP10)_(HEAT)_(BP28CT);(WD40)_(WD40)_(WD40)_(Sof1)	1	5	5	5	5	24	477	100	20	100
(Utp11);(WD40)_(WD40)	1	9	9	9	9	29	372	100	0	100
(Utp14);(WD40)_(WD40)_(WD40)_(Sof1)	1	21	21	21	21	28	2311	100	5	100
(Ribosomal_S24e);(Sas10_Utp3)	1	11	11	11	11	28	424	100	0	100
(S4);(Sas10_Utp3)	1	11	11	11	11	28	1429	100	0	100
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C)	1	10	10	10	10	23	519	90	0	100
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C)	1	10	10	10	10	36	335	90	0	100
(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C);(S4)	1	5	5	5	5	36	429	80	0	100
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	52	52	55	55	82	491	100	2	95
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)	1	91	91	91	91	28	644	99	11	100
(Acetyltransf_1);(TPR_1)_(NARP1)	1	5	5	5	5	30	2635	100	60	100
(SHS2_Rpb7-N)_(S1);(TFIIE_alpha)_(TF_Zn_Ribbon)	1	6	6	6	6	55	516	100	0	100
(TBP)_(TBP);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	12	13	12	13	39	419	100	31	100
(TFIIE_alpha)_(TF_Zn_Ribbon);(TFIIE_beta)_(TFA2_Winged_2)	1	7	7	7	7	11	1318	100	14	100
(TFIIF_alpha);(TFIIF_beta_N)_(TFIIF_beta)	1	11	11	11	11	87	1960	100	9	100
(ACR_tran);(HlyD_D23)	1	7	7	7	7	58	1248	100	71	100
(ACR_tran);(HlyD_D23)	2	7	7	7	7	58	733	100	71	100
(ACR_tran);(HlyD_D23)	3	6	6	7	7	58	242	100	67	86
(Actin);(F_actin_cap_B)	1	7	7	7	7	51	806	100	43	100
(Actin);(F-actin_cap_A)	1	9	9	9	9	51	593	100	44	100
(Actin);(F-actin_cap_A)	2	6	6	9	9	51	403	100	50	67
(C1-set);(Ig_2)_(ig)	1	7	9	8	10	81	582	100	11	88
(Ig_2)_(ig);(MHC_I)_(C1-set)	1	8	10	8	10	6	348	100	10	100
(EF-hand_1)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(EzrA)	1	9	11	9	11	33	1253	82	27	100
(EF-hand_7)_(EF-hand_7);(Myosin_head)_(IQ)	1	7	7	7	7	44	1137	100	57	100
(Actin);(RPEL)	1	6	7	6	7	28	916	100	100	100
(COX1);(COX2_TM)_(COX2)	1	28	102	28	104	15	3554	100	65	100
(COX1);(COX3)	1	28	28	29	96	19	2036	100	39	97
(COX1);(COX4)	1	15	15	20	86	11	1258	100	27	75
(COX1);(COX5B)	1	17	17	22	88	0	1153	100	24	77
(COX1);(COX6A)	1	14	14	20	86	21	362	100	29	70
(COX1);(COX7a)	1	16	81	19	85	0	263	100	60	84
(COX1);(COX7C)	1	21	21	22	88	0	1586	100	29	95
(COX2_TM)_(COX2);(COX4)	1	12	12	20	86	16	876	100	33	60
(COX2_TM)_(COX2);(COX5A)	1	14	14	20	86	36	308	100	29	70
(COX2_TM)_(COX2);(COX6B)	1	20	20	22	88	41	946	100	30	91
(COX2_TM)_(COX2);(COX6C)	1	19	19	20	86	0	1241	100	32	95
(COX3);(COX5B)	1	21	21	22	88	0	938	100	29	95
(COX3);(COX6A)	1	17	17	22	88	5	1526	100	18	77
(COX3);(COX6B)	1	19	19	22	88	41	258	100	32	86
(COX3);(COX7a)	1	21	21	22	88	0	1285	100	29	95
(COX4);(COX5A)	1	15	15	20	86	0	1061	100	27	75
(COX4);(COX6C)	1	10	10	13	79	74	403	100	20	77
(COX5A);(COX5B)	1	9	9	17	17	24	269	100	33	53
(COX5A);(COX6C)	1	13	13	20	86	0	562	100	31	65
(COX6A);(COX6B)	1	9	9	19	85	32	220	100	44	47
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)	1	55	97	59	106	0	1643	98	68	93
(Cytochrom_C1);(UCR_14kD)	1	39	75	45	85	23	401	100	75	87
(Cytochrom_C1);(UCR_hinge)	1	42	78	45	85	2	1101	100	72	93
(Cytochrom_C1);(UCR_UQCRX_QCR9)	1	39	74	45	85	5	855	100	74	87
(Cytochrom_C1);(UcrQ)	1	40	77	43	83	5	737	100	73	93
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)	1	40	75	45	85	5	424	100	76	89
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)	1	44	81	45	85	23	1293	98	69	98
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)	1	42	80	43	83	5	1036	98	71	98
(NusB);(Ribosomal_S10)	1	9	10	9	10	23	802	100	30	100
(EnY2);(Sgf11_N)_(Sgf11)	1	9	12	9	12	23	1362	100	92	100
(EnY2);(zf-UBP)_(UCH)	1	9	12	9	12	37	918	100	92	100
(Sgf11_N)_(Sgf11);(zf-UBP)_(UCH)	1	9	12	9	12	23	1684	100	92	100
(TAF)_(TAF6_C);(TFIID-31kDa)	1	9	9	9	9	20	1800	100	44	100
(TFIID_20kDa);(TFIID-31kDa)	1	8	8	8	8	12	634	100	38	100
(ubiquitin);(zf-UBP)_(UCH)	1	5	5	5	5	38	1718	100	60	100
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	1	22	45	23	57	6	1656	100	76	96
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	2	22	42	23	57	6	940	100	74	96
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)	1	35	57	45	85	21	401	88	68	78
(Peptidase_M16)_(Peptidase_M16_C);(UCR_6-4kD)	1	13	26	17	31	77	335	100	69	76
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)	1	29	49	42	82	26	260	96	69	69
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)	1	42	78	43	83	21	844	100	72	98
(UCR_14kD);(UCR_6-4kD)	1	7	7	16	30	84	215	100	0	44
(UCR_14kD);(UcrQ)	1	39	75	43	83	4	466	97	75	91
(UCR_6-4kD);(UCR_UQCRX_QCR9)	1	14	28	18	32	77	576	100	68	78
(UCR_hinge);(UcrQ)	1	16	39	28	62	62	296	100	77	57
(RanGAP1_C);(UQ_con)	1	6	11	6	11	81	569	100	9	100
(Cytochrom_C1);(UCR_TM)_(Rieske)	1	27	57	34	74	0	788	100	74	79
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	1	27	61	34	74	49	502	100	72	79
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	2	25	51	34	74	49	829	84	69	74
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)	1	30	60	34	74	28	874	100	70	88
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)	1	30	61	34	74	31	633	100	69	88
(UCR_TM)_(Rieske);(UcrQ)	1	27	61	34	74	4	586	100	72	79
(ECSIT);(Ribosomal_S11)	1	5	5	5	5	4	367	100	0	100
(Kunitz_legume);(Trypsin)	1	13	20	14	22	28	981	100	90	93
(Pkinase);(Tat)	1	5	6	5	6	14	227	100	83	100
(Cyclin_N)_(TFIIB);(Pkinase)	1	5	8	5	8	14	1022	100	75	100
(Globin);(NEAT)	1	6	6	6	6	45	624	100	50	100
(Pkinase);(RIIa)_(cNMP_binding)_(cNMP_binding)	1	6	9	6	9	36	1933	100	78	100
(POP1)_(POPLD);(Rpp20)	1	7	7	7	7	20	1252	100	0	100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(FAD_binding_5)_(CO_deh_flav_ C)	1	9	26	9	26	13	1187	100	100	100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(Fer2)_(Fer2_2)	1	8	23	8	23	19	2050	100	100	100
(FAD_binding_5)_(CO_deh_flav_C);(Fer2)_(Fer2_2)	1	8	23	8	23	13	1344	100	100	100
(Amidase);(GatB_N)_(GatB_Yqey)	1	5	9	5	9	37	1363	100	100	100
(GatB_N)_(GatB_Yqey);(Glu-tRNAGln)	1	5	11	5	11	28	1786	100	100	100
(Aminotran_5);(NifU_N)	1	7	12	8	13	23	913	100	92	88
(ANAPC2);(ANAPC4_WD40)_(ANAPC4)	1	10	10	10	10	79	540	100	40	100
(ANAPC2);(zf-ANAPC11)	1	11	11	11	11	79	1692	100	36	100
(Lys);(V-set)	1	6	10	25	60	18	743	100	70	24
(Lys);(V-set)	2	5	23	25	60	78	382	100	22	20
(Lys);(V-set)	3	5	23	25	60	76	526	100	22	20
(CSN8_PSD8_EIF3K);(PCI)_(Rpn3_C)	1	51	51	51	51	10	1939	100	29	100
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)	1	31	31	32	32	66	625	100	19	97
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_I D_OB)_(AAA)_(AAA_lid_3)	1	15	15	15	15	29	2168	100	20	100
(JAB)_(MitMem_reg);(VWA_2)	1	44	44	44	44	4	609	100	20	100
(PCI)_(Rpn3_C);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEA T_2)_(RPN2_C)	1	31	31	32	32	72	594	100	19	97
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_(RPN6_C_he lix)	1	12	12	13	13	43	617	100	33	92
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)	1	58	58	58	58	37	1413	100	28	100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_( RPN6_C_helix)	2	7	7	19	19	43	387	100	14	37
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)	1	12	12	22	22	37	312	100	33	55
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)	2	7	7	22	22	37	839	100	14	32
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)	1	29	29	29	29	31	321	100	38	100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	1	30	30	30	30	31	1614	100	37	100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	2	18	18	30	30	31	257	100	39	60
(JAB)_(MitMem_reg);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	9	9	16	16	66	278	100	22	56
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(ZapB)_(Prot_ATP_ID_OB)_( AAA)_(AAA_lid_3)	1	31	31	31	31	37	2701	100	35	100
(Proteasome_A_N)_(Proteasome);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)	2	5	5	19	19	61	376	100	0	26
(Proteasome_A_N)_(Proteasome);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)	3	5	5	19	19	51	503	100	0	26
(RPN6_N)_(PCI)_(RPN6_C_helix);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)	1	11	11	19	19	43	405	100	36	58
(RPN6_N)_(PCI)_(RPN6_C_helix);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)	2	6	6	19	19	43	471	100	33	32
(RPN7)_(PCI);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	12	12	22	22	37	850	100	33	55
(RPN7)_(PCI);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	2	8	8	22	22	37	324	100	25	36
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(P C_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)	1	13	13	13	13	74	685	100	8	100
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome _A_N)_(Proteasome)	1	11	11	11	11	60	297	100	27	100
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome _A_N)_(Proteasome)	2	11	11	11	11	52	644	100	27	100
(GTP_EFTU)_(GTP_EFTU_D2)_(RF3_C);(Ribosom_S12_S23)	1	8	9	8	9	72	447	100	11	100
(PCRF)_(RF-1);(Ribosomal_L11_N)_(Ribosomal_L11)	1	6	6	8	10	43	268	100	33	75
(RRM_1);(Torus)_(RRM_1)	1	17	17	17	17	21	1805	100	6	100
(BBS1);(PHTB1_N)_(PHTB1_C)	1	5	5	5	5	87	2237	100	0	100
(CHCH);(MRP-S35)	1	23	23	24	24	85	386	100	9	96
(CHCH);(Ribosomal_S2)	1	10	10	11	11	75	245	100	20	91
(CHCH);(Ribosomal_S21)	1	24	24	27	27	85	922	100	8	89
(CHCH);(Ribosomal_S6)	1	24	24	24	24	85	508	100	8	100
(CHCH);(Ribosomal_S7)	1	23	23	27	27	85	870	100	9	85
(DAP3);(MRP-S28)	1	23	23	32	32	84	1100	100	9	72
(ArfA);(PCRF)_(RF-1)	1	10	10	10	10	42	1140	100	40	100
(DAP3);(Ribosomal_S7)	1	24	24	31	31	85	925	100	8	77
(DAP3);(Ribosomal_S7)	2	7	7	31	31	23	1099	86	0	23
(DAP3);(Ribosomal_S9)	1	30	30	37	37	17	1005	100	7	81
(DAP3);(Ribosomal_S9)	2	7	7	37	37	23	754	86	0	19
(DUF1713);(Ribosomal_S15)	1	24	24	24	24	5	619	100	8	100
(L51_S25_CI-B8);(MRP-S22)	1	24	24	24	24	68	464	100	8	100
(L51_S25_CI-B8);(MRP-S26)	1	24	24	24	24	75	602	100	8	100
(L51_S25_CI-B8);(Ribosomal_S16)	1	24	24	24	24	87	646	100	8	100
(L51_S25_CI-B8);(Ribosomal_S17)	1	24	24	24	24	86	1308	100	8	100
(L51_S25_CI-B8);(Ribosomal_S5)_(Ribosomal_S5_C)	1	24	24	24	24	82	539	100	8	100
(MRP-S22);(MRP-S34)	1	24	24	24	24	5	268	100	8	100
(MRP-S22);(Ribosomal_S16)	1	24	24	24	24	68	1101	100	8	100
(MRP-S22);(Ribosomal_S18)	1	24	24	24	24	11	1984	100	8	100
(MRP-S22);(Ribosomal_S5)_(Ribosomal_S5_C)	1	24	24	24	24	68	1189	100	8	100
(MRP-S23);(MRP-S35)	1	24	24	24	24	82	911	100	8	100
(MRP-S23);(Ribosomal_S18)	1	24	24	24	24	80	456	100	8	100
(MRP-S23);(Ribosomal_S2)	1	24	24	24	24	75	1794	100	8	100
(MRP-S23);(Ribosomal_S5)_(Ribosomal_S5_C)	1	24	24	24	24	82	583	100	8	100
(MRP-S24);(MRP-S28)	1	23	23	23	23	84	1361	100	9	100
(MRP-S24);(MRP-S31)	1	24	24	24	24	75	285	100	8	100
(MRP-S24);(MRP-S33)	1	24	24	24	24	83	543	100	8	100
(MRP-S24);(Ribosomal_S10)	1	24	24	24	24	13	603	100	8	100
(MRP-S24);(Ribosomal_S14)	1	24	24	24	24	86	981	100	8	100
(MRP-S24);(Ribosomal_S5)_(Ribosomal_S5_C)	1	24	24	24	24	82	514	100	8	100
(MRP-S24);(Ribosomal_S9)	1	19	19	20	20	78	240	100	11	95
(MRP-S26);(MRP-S34)	1	24	24	24	24	75	751	100	8	100
(MRP-S26);(Ribosomal_S15)	1	24	24	27	27	5	482	100	8	89
(CENP-L);(CENP-N)	1	5	5	5	5	67	1480	100	80	100
(MRP-S26);(Ribosomal_S16)	1	25	25	28	28	4	789	100	8	89
(MRP-S26);(Ribosomal_S17)	1	22	22	22	22	75	269	100	9	100
(MRP-S26);(Ribosomal_S18)	1	24	24	24	24	75	790	100	8	100
(MRP-S26);(Ribosomal_S18)	2	24	24	24	24	3	607	100	8	100
(MRP-S26);(Ribosomal_S6)	1	24	24	27	27	75	911	100	8	89
(MRP-S27);(MRP-S34)	1	22	22	22	22	4	1359	100	9	100
(MRP-S27);(Ribosomal_S18)	1	22	22	22	22	81	304	100	9	100
(MRP-S28);(MRP-S31)	1	23	23	23	23	0	1166	100	9	100
(MRP-S28);(MRP-S33)	1	30	30	30	30	10	689	97	7	100
(MRP-S28);(Ribosomal_S10)	1	23	23	30	30	13	2134	100	9	77
(MRP-S28);(Ribosomal_S10)	2	7	7	30	30	30	2303	86	0	23
(MRP-S28);(Ribosomal_S9)	1	23	23	30	30	78	1316	100	9	77
(MRP-S28);(Ribosomal_S9)	2	7	7	30	30	30	672	86	0	23
(MRP-S31);(MRP-S33)	1	24	24	24	24	75	681	100	8	100
(MRP-S31);(Ribosomal_S10)	1	24	24	24	24	75	249	100	8	100
(MRP-S31);(Ribosomal_S14)	1	24	24	24	24	75	629	100	8	100
(MRP-S33);(Ribosomal_S14)	1	31	31	31	31	22	1206	97	6	100
(MRP-S33);(Ribosomal_S5)_(Ribosomal_S5_C)	1	24	24	24	24	82	1028	100	8	100
(MRP-S34);(Ribosomal_S16)	1	22	22	27	27	82	235	100	9	81
(MRP-S34);(Ribosomal_S18)	1	24	24	24	24	82	785	100	8	100
(MRP-S35);(Ribosomal_S18)	1	18	18	20	20	83	223	100	11	90
(MRP-S35);(Ribosomal_S2)	1	24	24	24	24	7	1109	100	8	100
(MRP-S35);(Ribosomal_S21)	1	23	23	24	24	4	704	100	9	96
(Ribosom_S12_S23);(Ribosomal_S17)	1	336	605	406	730	0	221	100	16	83
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	1	47	47	88	88	3	269	100	19	53
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	2	13	13	88	88	85	225	100	15	15
(Ribosomal_L13);(Ribosomal_L20)	1	444	662	468	690	0	532	100	13	95
(Ribosomal_L13);(Ribosomal_L21p)	1	6	6	17	17	23	248	100	17	35
(Phenol_Hydrox)_(YHS);(TmoB)	1	6	37	6	37	52	1322	100	100	100
(MIF4G)_(MIF4G_like)_(MIF4G_like_2);(RRM_1)	1	11	13	11	13	13	1470	100	77	100
(ArsA_ATPase);(CHD5)	1	6	7	6	7	9	516	100	57	100
(MoaE);(ThiS)	1	7	9	8	10	16	920	100	78	88
(Ribosomal_L13);(Ribosomal_L3)	1	184	250	196	262	3	361	97	8	94
(Ribosomal_L13);(Ribosomal_L3)	2	12	12	196	262	31	870	92	17	6
(Ribosomal_L14);(Ribosomal_L19)	1	453	674	479	701	0	798	100	12	95
(Ribosomal_L14);(Ribosomal_L3)	1	192	258	194	260	10	427	97	10	99
(Ribosomal_L16);(Ribosomal_L27)	1	52	164	105	231	7	243	100	3	50
(Ribosomal_L17);(Ribosomal_L3)	1	23	23	36	36	29	634	100	13	64
(Ribosomal_L17);(Ribosomal_L32p)	1	433	650	462	680	0	369	100	12	94
(Ribosomal_L18p);(Ribosomal_L27)	1	24	24	33	34	87	1094	100	12	73
(Ribosomal_L18p);(Ribosomal_L27)	2	7	8	33	34	0	246	100	12	21
(Ribosomal_L19);(Ribosomal_L3)	1	451	672	478	700	0	722	100	12	94
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)	1	78	78	149	163	40	236	100	17	52
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_S6)	1	24	24	38	45	0	309	96	4	63
(Ribosomal_L20);(Ribosomal_L21p)	1	449	671	472	695	0	976	100	12	95
(Ribosomal_L22);(Ribosomal_L32p)	1	454	676	477	700	0	466	100	13	95
(Ribosomal_L27A);(Ribosomal_L35p)	1	430	644	462	684	0	801	100	11	93
(Ribosomal_L27A);(Ribosomal_L35p)	2	11	16	462	684	45	513	100	69	2
(Ribosomal_L27A);(Ribosomal_L4)	1	458	658	490	711	0	486	100	13	93
(SNAP);(Synaptobrevin)	1	5	5	7	7	9	299	100	0	71
(Ribosomal_L27A);(Ribosomal_L4)	2	8	9	490	711	29	352	100	11	2
(Synaptobrevin);(Syntaxin)_(SNARE)	1	26	29	26	30	0	1402	100	72	100
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	1	265	447	336	525	0	233	100	10	79
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	2	25	25	336	525	8	1401	100	12	7
(Ribosomal_S10);(Ribosomal_S14)	1	610	914	629	961	0	788	99	13	97
(TBP)_(TBP);(TFIIB)_(TFIIB)	1	6	8	6	8	15	1190	100	88	100
(Ribosomal_S10);(Ribosomal_S9)	1	36	36	61	68	13	399	100	6	59
(Ribosomal_S11);(Ribosomal_S18)	1	96	285	156	460	3	315	100	6	62
(Ribosomal_S11);(Ribosomal_S18)	2	26	107	156	460	27	311	100	2	17
(Ribosomal_S11);(Ribosomal_S21)	1	288	313	319	347	0	1069	100	13	90
(Ribosomal_S11);(Ribosomal_S7)	1	297	559	393	709	0	243	100	15	76
(Ribosomal_S11);(Ribosomal_S7)	2	7	10	393	709	14	203	100	0	2
(Ribosomal_S15);(Ribosomal_S17)	1	25	25	34	34	2	358	100	8	74
(Ribosomal_S15);(Ribosomal_S6)	1	27	27	37	37	2	376	100	7	73
(Ribosomal_S15);(Ribosomal_S6)	2	7	7	37	37	27	514	86	0	19
(Ribosomal_S16);(Ribosomal_S18)	1	25	25	25	25	84	585	100	8	100
(Ribosomal_S18);(Ribosomal_S21)	1	144	168	201	228	0	291	99	13	72
(Ribosomal_S18);(Ribosomal_S5)_(Ribosomal_S5_C)	1	25	25	25	25	7	582	100	8	100
(Ribosomal_S18);(Ribosomal_S6)	1	430	726	449	775	0	898	100	10	96
(Ribosomal_S2);(Ribosomal_S21)	1	20	20	21	21	75	245	100	10	95
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)	1	72	78	83	89	6	510	91	13	87
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)	2	10	10	83	89	26	307	90	10	12
(Ribosomal_S2);(Ribosomal_S9)	1	34	34	34	34	24	1165	97	6	100
(Ribosomal_S21);(Ribosomal_S6)	1	21	21	27	27	19	223	100	10	78
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(V-ATPase_G)	1	10	10	10	10	64	228	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(vATP-synt_E)	1	19	19	20	20	15	1503	95	26	95
(Ribosomal_S21);(Ribosomal_S9)	1	20	20	21	21	78	237	100	10	95
(ATP_synth_reg);(ATP-synt_A)	1	18	18	24	24	62	390	100	28	75
(ATP-synt_8);(ATP-synt_A)	1	25	25	25	25	4	927	100	24	100
(ATP-synt_8);(Mit_proteolip)	1	10	10	20	20	4	599	100	50	50
(ATP-synt_8);(Mt_ATP-synt_B)	1	7	7	23	23	89	294	100	57	30
(ATP-synt_A);(Mit_proteolip)	1	10	10	20	20	62	580	100	50	50
(ATP-synt_A);(WRW)	1	20	20	25	25	32	691	100	25	80
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(IATP)	1	11	11	20	20	25	425	100	36	55
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(IATP)	1	23	23	23	23	16	684	100	17	100
(ATP-synt_E);(ATP-synt_G)	1	20	20	20	20	88	646	100	30	100
(ATP-synt_E);(Mt_ATP-synt_B)	1	10	10	20	20	3	258	100	50	50
(Ribosomal_S7);(Ribosomal_S9)	1	542	813	624	932	0	427	99	11	87
(Ribosomal_S7);(Ribosomal_S9)	2	28	28	624	932	78	1420	100	7	4
(ATP-synt_G);(Mt_ATP-synt_B)	1	19	19	20	20	3	456	100	26	95
(ATP-synt_G);(WRW)	1	10	10	20	20	32	500	100	50	50
(Mt_ATP-synt_B);(WRW)	1	20	20	25	25	1	557	100	30	80
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)	1	56	67	61	72	5	1263	100	42	92
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_DE_N )_(ATP-synt_DE)	1	15	16	32	33	5	318	88	12	47
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_DE_N )_(ATP-synt_DE)	1	14	14	32	33	38	317	100	14	44
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_DE_N )_(ATP-synt_DE)	2	11	11	32	33	38	450	100	18	34
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	1	22	23	30	31	5	248	96	4	73
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	2	21	22	30	31	17	250	95	5	70
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)	1	16	26	21	31	21	677	100	85	76
(B1);(V-set)_(C1-set)	1	6	18	6	18	60	642	100	11	100
(B56);(STPPase_N)_(Metallophos)	1	5	6	5	6	67	887	100	50	100
(OTCace_N)_(OTCace);(PyrI)_(PyrI_C)	1	6	63	7	77	45	670	100	98	86
(Phage_sheath_1)_(Phage_sheath_1C);(Phage_T4_gp19)	1	5	5	5	5	46	652	100	40	100
(eRF1_1)_(eRF1_2)_(eRF1_3);(Ribosom_S12_S23)	1	5	5	5	5	34	342	100	0	100
(Ribosom_S12_S23);(RLI)_(Fer4)_(ABC_tran)_(ABC_tran)	1	7	7	7	7	43	472	100	14	100
(Ribosomal_L10)_(RL10P_insert)_(Ribosomal_60s);(Ribosomal_L1 1_N)_(Ribosomal_L11)	1	9	9	9	9	25	267	100	0	100
(Ribosomal_L13);(Ribosomal_L14e)	1	26	26	26	26	4	926	100	12	100
(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	5	5	5	5	27	227	100	20	100
(Ribosomal_L6)_(Ribosomal_L6);(RLI)_(Fer4)_(ABC_tran)_(ABC_t ran)	1	8	8	8	8	51	291	100	0	100
(CSN8_PSD8_EIF3K);(PCI)	2	7	8	15	16	3	1498	100	38	47
(eIF-1a);(Ribosom_S12_S23)	1	33	33	33	33	8	388	97	18	100
(eIF-1a);(Ribosomal_S19)	1	5	5	5	5	24	352	100	0	100
(eIF-3c_N)_(PCI);(Ribosomal_S27e)	1	13	13	14	14	28	572	100	15	93
(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C);(S1)_(EIF_2_alpha)	1	17	17	17	17	25	688	100	24	100
(BIR);(Nbl1_Borealin_N)	1	5	6	5	6	88	1238	100	100	100
(Arrestin_N)_(Arrestin_C);(V-set)_(C1-set)	1	14	17	14	19	77	591	94	35	100
(Pescadillo_N)_(BRCT_2);(Ribosomal_L30_N)_(Ribosomal_L30)	1	13	13	13	13	89	1275	100	15	100
(Bot1p);(Ribosomal_S16)	1	7	7	7	7	23	1603	86	0	100
(Bot1p);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	7	7	23	978	86	0	100
(Bot1p);(Ribosomal_S8)	1	7	7	7	7	23	296	86	0	100
(DAP3);(Ribosomal_S13)	1	7	7	7	7	23	455	86	0	100
(ECH_2);(MRP-S25)	1	7	7	7	7	36	446	86	0	100
(ECH_2);(Ribosomal_S2)	1	8	8	8	8	24	561	88	0	100
(KOW);(Mitoc_mL59)	1	9	9	9	9	24	1009	89	11	100
(KOW);(MRP-L47)	1	9	9	9	9	24	1377	89	11	100
(L31);(Ribosomal_L16)	1	9	9	9	9	40	707	89	11	100
(L31);(Ribosomal_L30)	1	10	10	10	10	22	915	90	10	100
(L51_S25_CI-B8);(MRP-L20)	1	9	9	9	9	24	455	89	11	100
(Mit_ribos_Mrp51);(MRP-S25)	1	7	7	7	7	22	3228	86	0	100
(Mit_ribos_Mrp51);(Ribosomal_S18)	1	7	7	7	7	22	1384	86	0	100
(Mit_ribos_Mrp51);(Ribosomal_S2)	1	7	7	7	7	22	1214	86	0	100
(Mit_ribos_Mrp51);(Ribosomal_S21)	1	7	7	7	7	22	398	86	0	100
(Mit_ribos_Mrp51);(Sod_Fe_N)_(Sod_Fe_C)	1	7	7	7	7	22	589	86	0	100
(Mitoc_mL59);(Ribosomal_L27A)	1	9	9	9	9	33	854	89	11	100
(Mitoc_mL59);(Ribosomal_L33)	1	10	10	10	10	26	657	90	10	100
(MRP-L20);(Ribosomal_L21p)	1	9	9	9	9	24	1024	89	11	100
(MRP-L20);(Ribosomal_L22)	1	9	9	9	9	24	613	89	11	100
(MRP-L28);(Ribosomal_L31)	1	9	9	9	9	22	881	89	11	100
(MRP-L28);(Ribosomal_L5)_(Ribosomal_L5_C)	1	9	9	9	9	22	2239	89	11	100
(MRP-S25);(Ribosomal_S18)	1	7	7	7	7	27	610	86	0	100
(MRP-S25);(Ribosomal_S2)	1	7	7	7	7	36	2213	86	0	100
(MRP-S25);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	7	7	36	436	86	0	100
(MRP-S25);(Ribosomal_S8)	1	7	7	7	7	36	878	86	0	100
(MRP-S25);(Sod_Fe_N)_(Sod_Fe_C)	1	7	7	7	7	25	1344	86	0	100
(Ribosomal_S2);(Sod_Fe_N)_(Sod_Fe_C)	1	7	7	7	7	25	1234	86	0	100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	1	5	10	5	10	34	666	100	100	100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	2	5	10	5	10	34	420	100	100	100
(Ribosomal_L14e);(Ribosomal_L6e)	1	5	5	5	5	21	507	100	20	100
(Ribosomal_L23);(Ribosomal_L39)	1	11	71	11	71	34	276	100	1	100
(MPP6);(Rrp40_N)_(KH_6)	1	7	7	7	7	12	1379	100	14	100
(TFIID_NTD2)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(TFII D-31kDa)	1	5	5	5	5	65	1202	100	0	100
(7tm_1);(G-alpha)	1	81	81	180	180	2	1197	100	2	45
(7tm_1);(G-alpha)	2	25	25	180	180	21	1127	100	0	14
(DIM1);(Nop)_(Prp31_C)	1	10	10	10	10	25	414	100	50	100
(Nop)_(Prp31_C);(Ribosomal_L7Ae)	1	10	10	10	10	25	502	100	50	100
(PRP4)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(Rib osomal_L7Ae)	1	8	8	8	8	32	712	100	50	100
(CBF_beta);(Runt)	1	5	13	5	13	10	1085	100	100	100
(Peptidase_S8);(potato_inhibit)	1	10	28	11	29	35	806	100	100	91
(ig)_(ig)_(ig);(MHC_I)_(C1-set)	1	7	8	7	9	88	923	88	50	100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)	2	7	8	7	9	88	599	12	25	100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)	3	7	8	7	9	88	375	0	0	100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)	4	7	8	7	9	88	597	0	0	100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)	5	6	7	7	9	88	268	0	0	86
(G-alpha);(V-set)_(V-set)	1	87	87	148	148	43	532	100	0	59
(G-alpha);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	160	161	227	228	4	1261	100	4	70
(G-gamma);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	169	178	236	246	0	2083	100	11	72
(Ig_J_chain);(V-set)_(V-set)_(V-set)_(V-set)	1	9	9	9	9	67	429	100	0	100
(DUF5089);(Synaptobrevin)	1	11	14	15	19	10	319	100	93	73
(DUF5089);(Syntaxin)_(SNARE)	1	18	21	19	23	6	1501	100	95	95
(DUF5089);(TolA_bind_tri)	1	9	12	9	13	10	1430	100	92	100
(Syntaxin)_(SNARE);(TolA_bind_tri)	1	9	12	9	13	19	354	100	83	100
(Synaphin);(Synaptobrevin)	1	6	6	6	6	52	321	100	67	100
(Synaphin);(Syntaxin)_(SNARE)	1	6	6	6	6	10	271	100	67	100
(HRM)_(7tm_2);(RAMP)	1	6	6	6	6	40	1919	100	0	100
(HAV_VP);(Rhv)	1	14	15	14	15	5	1257	100	13	100
(HAV_VP);(Rhv)	2	11	11	14	15	7	3398	100	0	79
(Ras);(RBD-FIP)	1	7	7	9	10	35	521	100	71	78
(EF-hand_7)_(EF-hand_7);(KCNQ_channel)	1	5	7	6	8	29	1527	100	100	83
(Reovirus_L2);(Sigma_1_2)	1	6	6	6	6	21	416	100	17	100
(G-alpha);(V-set)	1	104	104	113	113	1	828	99	1	92
(G-alpha);(ZapB)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	54	54	61	61	24	1360	98	4	89
(Cas_Cmr3);(RAMPs)	1	8	8	8	8	24	1104	100	88	100
(Cas_Cmr5);(RAMPs)	1	8	8	8	8	21	521	100	88	100
(Cas_Cmr5);(RAMPs)	2	8	8	8	8	21	289	100	88	100
(GP120);(ig)_(C2-set)	1	30	39	30	43	21	1030	100	33	100
(Ribosomal_L13);(Ribosomal_L6)_(Ribosomal_L6)	1	7	67	12	72	45	273	100	1	58
(Ribosomal_L16);(Ribosomal_L25p)	1	288	316	308	336	21	386	100	13	94
(Ribosomal_L18p);(Ribosomal_L5)_(Ribosomal_L5_C)	1	14	14	19	19	71	227	100	21	74
(Ribosomal_L23);(Ribosomal_L29)	1	432	708	455	737	0	492	100	11	95
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	1	221	390	260	438	0	978	100	11	85
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	2	10	12	260	438	17	704	100	8	4
(Plexin_cytopl);(Ras)	1	5	5	7	7	40	676	100	100	71
(potato_inhibit);(Trypsin)	1	6	8	6	8	33	837	100	100	100
(DNA_pol_B_exo1)_(DNA_pol_B)_(zf-C4pol);(PCNA_N)_(PCNA_C)	1	6	6	6	6	36	1034	100	83	100
(Sld5);(SLD5_C)	1	6	6	6	6	37	1716	100	100	100
(SRP14);(SRP9-21)	1	9	11	9	11	7	1354	91	36	100
(CDI);(Pkinase)	1	7	8	8	10	35	1104	100	100	88
(CENP-S);(CENP-X)	1	13	16	13	16	10	2300	100	100	100
(CENP-S);(CENP-X)	2	5	5	13	16	65	221	0	0	38
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L12_N)_(Ribosomal_L12)	1	6	6	7	7	30	300	100	0	86
(Ribosom_S12_S23);(RRF)	1	7	9	7	9	10	434	100	0	100
(Chloroa_b-bind);(Photo_RC)	1	7	7	7	7	55	249	100	14	100
(Chloroa_b-bind);(PsbH)	1	7	7	7	7	55	520	100	14	100
(Chloroa_b-bind);(PSII)	1	7	7	8	8	55	862	100	14	88
(Chloroa_b-bind);(PSII)	2	5	5	8	8	52	238	100	0	62
(Chloroa_b-bind);(Ycf9)	1	8	8	8	8	52	300	100	0	100
(MSP);(PsbQ)	1	7	7	7	7	11	274	100	0	100
(MSP);(PsbW)	1	8	8	8	8	38	495	100	12	100
(Photo_RC);(PsbW)	1	11	11	11	11	26	476	100	9	100
(PsbI);(PsbW)	1	11	11	11	11	9	796	100	0	100
(PsbQ);(PSII)	1	8	8	8	8	11	1402	100	0	100
(PsbW);(PSII)	1	11	11	11	11	26	790	100	9	100
(COX1);(COX2_TM)_(COX2)_(COX_ARM)	1	5	5	5	5	31	3284	100	80	100
(Prefoldin);(Prefoldin_2)	1	7	7	7	7	18	814	100	29	100
(Prefoldin);(Prefoldin_2)	2	7	7	7	7	19	758	100	29	100
(CsgF);(CsgG)	1	5	5	6	6	10	228	100	0	83
(CsgF);(CsgG)	2	5	5	6	6	10	1023	100	0	83
(CsgF);(CsgG)	3	5	5	6	6	10	377	100	0	83
(JAB)_(CSN5_C);(PCI)_(CSN4_RPN5_eIF3a)	1	5	6	5	6	67	509	100	50	100
(PCI);(RPN7)_(PCI)	1	5	6	5	6	3	2024	100	50	100
(PCI)_(CSN4_RPN5_eIF3a);(PCI)_(CSN7a_helixI)	1	5	6	5	6	60	941	100	50	100
(Cullin_binding);(Cullin_Nedd8)	1	5	5	5	5	27	553	60	0	100
(AA_permease_2);(SLC3A2_N)_(Alpha-amylase)_(DUF3459)	1	13	13	16	16	25	1324	100	0	81
(Ribosomal_S10);(Ribosomal_S3_C)	1	6	6	6	6	76	551	100	67	100
(T2SSI);(T2SSJ)	1	6	6	6	6	24	735	100	100	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	1	22	45	29	68	11	1324	100	73	76
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	2	18	28	29	68	11	468	96	68	62
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	3	18	25	29	68	16	687	96	60	62
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	4	9	43	29	68	19	1298	100	93	31
(Med11);(Med17)	1	10	10	12	12	8	1175	100	30	83
(Med11);(Med18)	1	6	6	6	6	11	369	100	33	100
(Med11);(Med22)	1	11	11	11	11	5	1557	100	36	100
(Med11);(Med8)	1	5	5	5	5	21	893	100	40	100
(Med17);(Med22)	1	11	11	12	12	8	1140	100	27	92
(Med17);(Med8)	1	8	8	9	9	6	1250	100	25	89
(Med18);(Med20)	1	13	13	13	13	5	1394	100	38	100
(Med18);(Med8)	1	9	9	9	9	11	607	100	22	100
(Med31);(Med7)	1	7	8	7	8	25	969	100	38	100
(DDA1);(MMS1_N)_(CPSF_A)	1	5	5	6	8	60	2363	100	80	83
(DDDD);(MCU)	1	9	9	9	9	12	624	100	0	100
(DDDD);(MCU)	2	8	8	9	9	87	799	100	0	89
(LSM);(U1snRNP70_N)_(RRM_1)	1	7	7	7	7	22	303	100	14	100
(TBP)_(TBP);(TFIIA)	1	11	12	11	12	50	343	100	25	100
(TNF);(TNFR_c6)_(TNFR_c6)	1	5	5	7	7	53	784	100	100	71
(TNF);(TNFR_c6)_(TNFR_c6)	2	5	5	7	7	53	801	80	100	71
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	1	8	10	8	11	19	609	100	80	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	2	8	10	8	11	19	491	100	80	100
(Myb_DNA-bind_7);(TBP)_(TBP)	1	6	6	6	6	29	620	100	83	100
(RNA_pol_I_A49);(RNA_polI_A34)	1	31	35	31	35	38	2028	100	83	100
(DEAD)_(Helicase_C);(Mago_nashi)	1	10	10	10	10	4	1430	100	50	100
(Mago_nashi);(RRM_1)	1	14	14	14	14	0	1190	100	64	100
(Sec61_beta);(Sec66)	1	5	5	17	17	26	407	100	0	29
(NMD3);(Ribosomal_L44)	1	14	14	15	15	44	568	100	29	93
(Ribosomal_L22);(zf-C2H2_2)	1	8	8	8	8	33	475	100	100	100
(Bud13);(RRM_1)	1	12	13	12	13	1	1106	100	8	100
(MMS1_N)_(CPSF_A);(SF3b10)	1	25	29	25	29	22	1701	100	34	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM_N)_(MCM_OB)_(MCM)_(MCM _lid)_(MCM6_C)	1	25	25	27	27	44	3510	100	32	93
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM2_N)_(MCM_N)_(MCM_OB)_( MCM)_(MCM_lid)	1	25	25	28	28	30	3044	100	52	89
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)_(MCM6_C);(MCM2_N)_(MCM_N)_( MCM_OB)_(MCM)_(MCM_lid)	1	30	30	32	32	33	2870	100	43	94
(Ribosomal_L39);(zf-C2H2_2)	1	8	8	8	8	33	362	100	100	100
(Ribosomal_L4)_(Ribos_L4_asso_C);(zf-C2H2_2)	1	6	6	6	6	34	246	100	100	100
(Ribosomal_L23eN)_(Ribosomal_L23);(SecE)	1	6	6	8	8	63	232	100	17	75
(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol _Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	19	41	19	41	80	265	100	66	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)	1	149	186	163	203	33	999	100	37	91
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)	1	68	68	71	71	42	1708	100	16	96
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)	2	66	66	71	71	42	305	100	17	93
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	77	94	79	96	42	8097	100	12	97
(Gtr1_RagA);(LAMTOR)	1	5	5	7	7	10	714	100	40	71
(Ribosomal_S24e);(RS4NT)_(Ribosomal_S4e)_(KOW)_(40S_S4_C)	1	5	5	5	5	53	584	100	0	100
(Ribosomal_S6e);(RS4NT)_(Ribosomal_S4e)_(KOW)_(40S_S4_C)	1	5	5	5	5	54	373	100	0	100
(RS4NT)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)	1	5	5	5	5	57	357	100	0	100
(DUF3585);(Ras)	1	6	7	6	7	27	862	100	86	100
(DUF5601)_(VPS9);(Ras)	1	5	7	5	7	24	1042	100	100	100
(COX1);(Cytochrom_B_N_2)	1	6	6	6	6	83	905	100	17	100
(COX3);(Cytochrom_B_N_2)	1	6	6	6	6	83	660	100	17	100
(Cyt_c_ox_IV);(Cytochrom_B_N_2)	1	6	6	6	6	83	933	100	17	100
(Cytochrom_B_N_2);(Cytochrom_C)_(Cytochrome_CBB3)	1	6	6	6	6	79	2300	100	17	100
(Cytochrom_B_N_2);(DUF2631)	1	6	6	6	6	83	1674	100	17	100
(Cytochrom_B_N_2);(QcrA_N)_(Rieske)	1	6	6	6	6	80	810	100	17	100
(Cytochrom_B_N_2);(QcrA_N)_(Rieske)	2	6	6	6	6	80	4584	100	17	100
(EccE);(YukD)_(EccD)	1	5	5	5	5	13	611	100	60	100
(EF-hand_7);(Shal-type)_(BTB_2)_(Ion_trans)_(DUF3399)	1	5	5	5	5	68	1394	100	0	100
(EF-hand_7);(Shal-type)_(BTB_2)_(Ion_trans)_(DUF3399)	2	5	5	5	5	68	1812	100	0	100
(EGF);(Recep_L_domain)_(Furin-like)_(Recep_L_domain)_(GF_rec ep_IV)_(PK_Tyr_Ser-Thr)	1	9	9	9	9	23	1464	100	0	100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	4	801	41	5	100
(Ribosomal_60s);(Ribosomal_L10)_(RL10P_insert)_(Ribosomal_60 s)	1	5	5	5	5	10	786	80	20	100
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	571	41	5	100
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	1	12	25	21	34	77	260	32	0	57
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	533	41	5	100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	10	418	41	5	100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	252	41	5	100
(S10_plectin);(Stm1_N)_(HABP4_PAI-RBP1)	1	5	7	8	10	82	205	57	14	62
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)	1	9	9	9	9	56	529	33	0	100
(Ribosomal_L7Ae);(Stm1_N)	1	6	6	8	8	87	276	50	0	75
(Ribosomal_S13);(Stm1_N)	1	9	9	9	9	56	482	33	0	100
(Ribosomal_S19);(Stm1_N)	1	9	9	9	9	56	422	33	0	100
(EGF)_(FXa_inhibition);(Trypsin)	1	11	32	11	32	10	878	100	100	100
(HVO_2753_ZBP);(Ribosomal_S2)	1	7	7	7	7	84	786	100	29	100
(HVO_2753_ZBP);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	7	7	84	727	100	29	100
(IF-2B);(S1)_(LZ3wCH)_(EIF_2_alpha)	1	9	10	9	10	47	874	100	60	100
(Ribosomal_L21e);(Ribosomal_L5e)	1	13	73	13	73	21	526	100	1	100
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)	1	11	71	11	71	38	225	100	1	100
(Ribosomal_L28e);(Ribosomal_L6e)	1	6	6	6	6	21	444	100	17	100
(FtsK_SpoIIIE)_(FtsK_SpoIIIE)_(FtsK_SpoIIIE);(T7SS_ESX1_EccB )	1	6	6	6	6	75	667	100	17	100
(FtsK_SpoIIIE)_(FtsK_SpoIIIE)_(FtsK_SpoIIIE);(YukD)_(EccD)	1	7	7	7	7	72	1633	100	29	100
(FtsK_SpoIIIE)_(FtsK_SpoIIIE)_(FtsK_SpoIIIE);(YukD)_(EccD)	2	7	7	7	7	72	1021	100	29	100
(eRF1_1)_(eRF1_2)_(eRF1_3);(HBS1_N)_(GTP_EFTU)_(GTP_EFTU_D2) _(GTP_EFTU_D3)	1	7	7	7	7	30	1763	100	0	100
(HBS1_N)_(GTP_EFTU)_(GTP_EFTU_D2)_(GTP_EFTU_D3);(Ribosom_S12 _S23)	1	5	5	5	5	33	322	100	0	100
(PPTA)_(PPTA)_(PPTA)_(PPTA)_(PPTA);(Prenyltrans)_(Prenyltran s)_(Prenyltrans)_(Prenyltrans)_(Prenyltrans)	1	5	75	5	75	19	3038	93	100	100
(FGF);(I-set)_(I-set)	1	12	15	12	15	17	1383	100	100	100
(PapC_N)_(Usher)_(PapC_C);(PapD_N)_(PapD_C)	1	5	5	5	5	26	1039	100	60	100
(Flavi_glycop_C);(V-set)_(V-set)	1	6	6	6	6	46	914	100	0	100
(Ribosomal_L14);(Ribosomal_L24e)	1	184	251	184	251	0	529	97	10	100
(Flavi_NS2B);(Peptidase_S7)_(Flavi_DEAD)	1	5	7	6	9	68	1429	100	14	83
(AAR2);(PRP8_domainIV)	1	5	396	6	398	21	769	1	4	83
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	1	558	862	587	919	0	409	99	11	95
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	1	566	894	586	918	0	780	99	13	97
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)	1	183	189	187	193	2	493	96	8	98
(KH_2)_(Ribosomal_S3_C);(S10_plectin)	1	177	183	177	183	0	879	96	7	100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)	1	159	165	161	167	3	491	96	7	99
(Ribosomal_L7Ae);(S10_plectin)	1	21	21	26	26	20	288	90	5	81
(Ribosomal_S13);(Ribosomal_S19)	1	588	911	610	942	0	426	99	10	96
(Ribosomal_S13);(Ribosomal_S19e)	1	189	195	193	199	4	443	96	11	98
(Ribosomal_S13);(Ribosomal_S25)	1	175	181	177	183	0	461	96	9	99
(Ribosomal_S14);(Ribosomal_S19)	1	255	283	300	329	6	335	100	13	85
(Ribosomal_S14);(S10_plectin)	1	165	171	168	174	0	297	95	7	98
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	167	173	167	173	10	524	96	9	100
(Ribosomal_S19e);(Ribosomal_S9)	1	128	128	136	136	2	282	98	12	94
(Ribosomal_S25);(Ribosomal_S7)	1	184	190	184	190	2	594	96	9	100
(Ribosomal_S28e);(Ribosomal_S7)	1	225	231	225	231	0	1099	97	10	100
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	1	600	899	618	950	0	579	99	12	97
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)	1	160	166	161	167	10	299	96	8	99
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)	1	96	96	100	100	5	592	99	7	96
(Ribosomal_S2);(Ribosomal_S8)	1	84	356	90	387	82	258	100	5	93
(Fibrillarin);(Ribosomal_L7Ae)	1	22	22	27	30	61	456	100	5	81
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)	1	15	15	15	15	34	1107	100	47	100
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)	2	12	12	15	15	23	759	100	50	80
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)	3	10	10	15	15	34	1017	100	40	67
(RNase_PH);(RNase_PH)_(RNase_PH_C)	1	17	17	17	17	3	1604	100	53	100
(RNase_PH);(RNase_PH)_(RNase_PH_C)	2	17	17	17	17	17	1162	100	53	100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)	1	17	17	17	17	30	789	100	53	100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)	2	17	17	17	17	26	1196	100	47	100
(RGM_N);(TGF_beta)	1	8	8	8	9	37	553	88	88	100
(RGM_N);(TGF_beta)	2	8	8	8	9	37	415	88	88	100
(Ribosomal_L31);(Ribosomal_S13)	1	151	309	197	367	0	399	100	12	77
(Ribosomal_L31);(Ribosomal_S13)	2	5	5	197	367	49	347	100	0	3
(Ribosomal_L31);(Ribosomal_S14)	1	6	6	16	16	23	275	83	0	38
(Ribosomal_L31);(Ribosomal_S19)	1	156	291	200	357	5	436	100	12	78
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	1	215	355	384	566	24	273	100	10	56
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	2	60	60	384	566	58	282	98	0	16
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	3	46	72	384	566	4	307	100	1	12
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	1	328	624	401	727	0	321	100	15	82
(Ribosomal_S4)_(S4);(Ribosomal_S6)	1	26	61	60	146	28	386	11	0	43
(Ribosomal_S4)_(S4);(Ribosomal_S6)	2	8	27	60	146	10	258	0	0	13
(G-alpha);(RGS)	1	9	9	9	9	33	893	100	11	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb 2_6)_(RNA_pol_Rpb2_7)	1	11	27	11	27	32	1870	100	70	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb 2_6)_(RNA_pol_Rpb2_7)	2	6	22	11	27	37	246	100	86	55
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab)_(T3SS_ATPase_C)	1	164	172	164	173	18	2074	100	52	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L10)_(RL10P_insert)_(Ribosomal_60s)	1	7	7	7	7	52	550	100	0	100
(IgG_binding_B);(V-set)_(C1-set)	1	8	8	8	8	50	528	100	12	100
(DNA_RNApol_7kD);(RNA_pol_A_bac)	1	117	237	121	249	0	584	100	58	97
(DNA_RNApol_7kD);(RNA_pol_N)	1	25	29	65	118	30	202	100	66	38
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	81	205	84	208	21	1008	100	53	96
(RNA_pol_A_bac);(RNA_pol_L_2)	1	116	238	121	249	4	2037	100	65	96
(RNA_pol_A_bac);(RNA_pol_N)	1	117	237	121	249	20	1111	100	70	97
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	47	135	57	179	49	363	100	50	82
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	69	185	72	196	42	1684	99	70	96
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	69	193	72	196	35	963	99	46	96
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	77	199	82	206	21	451	99	63	94
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	69	193	72	196	45	1534	99	69	96
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	79	203	82	206	25	1327	100	52	96
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	80	204	84	208	38	1528	100	70	95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	70	194	73	197	52	9001	99	55	96
(Herpes_capsid);(Herpes_MCP)	1	11	11	11	11	26	1813	100	0	100
(Herpes_capsid);(Herpes_MCP)	2	11	11	11	11	26	587	100	0	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)	1	17	60	42	93	51	232	98	50	40
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)	1	70	194	73	197	5	2122	99	69	96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	69	191	73	197	4	1905	99	68	95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	69	193	73	197	35	1525	99	68	95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	62	115	66	119	5	591	99	48	94
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)	1	21	67	41	92	51	289	99	45	51
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(SHS2_Rpb7-N)_(S1)	1	11	11	27	73	24	268	100	36	41
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)	1	73	125	77	131	1	2003	99	47	95
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)	1	69	120	73	127	4	434	98	44	95
(Herpes_UL17);(Herpes_UL25)	1	5	5	11	11	82	1431	100	0	45
(Herpes_UL17);(Herpes_UL25)	2	5	5	11	11	82	2351	100	0	45
(MMS1_N)_(CPSF_A);(WD40)_(WD40)_(WD40)	1	8	11	8	11	49	2448	100	100	100
(Histone);(Histone)_(Histone_H2A_C)	1	278	428	285	489	6	2420	99	54	98
(Histone);(Histone)_(Histone_H2A_C)	2	253	365	285	489	23	661	99	51	89
(Histone);(TAF)	1	286	413	298	509	12	2436	100	54	96
(Histone);(TAF)	2	261	379	298	509	2	415	100	51	88
(Histone)_(Histone_H2A_C);(TAF)	1	257	381	265	468	11	412	99	51	97
(Actin);(Cofilin_ADF)	1	6	6	12	12	13	1230	100	67	50
(Actin);(Cofilin_ADF)	2	6	6	12	12	82	829	100	0	50
(RAG1_imp_bd)_(zf-C3HC4)_(zf-RAG1)_(RAG1);(RAG2)_(RAG2_PHD)	1	14	14	14	14	52	1918	100	0	100
(RAG1_imp_bd)_(zf-C3HC4)_(zf-RAG1)_(RAG1);(RAG2)_(RAG2_PHD)	2	5	5	14	14	52	589	100	0	36
(IL2RB_N1)_(fn3);(IL6Ra-bind)_(fn3)	1	6	6	6	6	59	893	100	50	100
(Actin);(Gelsolin)	1	18	41	18	55	11	1286	100	98	100
(Actin);(Gelsolin)	2	7	17	18	55	72	400	0	0	39
(Actin);(Gelsolin)	3	7	16	18	55	72	277	0	0	39
(NusG)_(KOW);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1 _3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	34	34	34	34	4	662	100	6	100
(TGF_beta);(TGFb_propeptide)	1	6	7	7	8	13	1026	100	71	86
(KOW)_(Ribosomal_L14e);(KOW)_(Ribosomal_L6e)	1	10	10	10	10	21	536	100	10	100
(KOW)_(Ribosomal_L6e);(Ribosomal_L35Ae)	1	10	10	10	10	21	876	100	10	100
(ETF);(ETF)_(ETF_alpha)	1	12	18	12	18	9	2074	100	94	100
(Adaptin_N);(Arf)	1	7	7	8	8	12	857	100	14	88
(Adaptin_N);(Clat_adaptor_s)	1	31	34	34	37	6	2534	100	53	91
(Adaptin_N);(Clat_adaptor_s)	2	8	10	34	37	44	613	100	60	24
(Adaptin_N);(Clat_adaptor_s)_(Adap_comp_sub)	1	23	26	27	30	40	3070	100	50	85
(Adaptin_N);(Clat_adaptor_s)_(Adap_comp_sub)	2	9	11	27	30	29	1118	100	64	33
(Clat_adaptor_s);(Clat_adaptor_s)_(Adap_comp_sub)	1	9	12	18	21	40	498	100	67	50
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)	1	12	19	12	19	21	1233	100	84	100
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)	2	5	11	12	19	82	495	0	0	42
(AdenylateSensor);(AMPKBI)	1	8	20	8	20	22	1987	100	100	100
(AMPKBI);(CBS)_(CBS)_(CBS)_(CBS)	1	5	12	5	12	88	901	100	100	100
(Lys);(tRNA_anti-codon)	1	5	5	5	5	86	864	100	0	100
(Cyclin_N);(Pkinase)	1	7	16	7	18	12	1637	100	88	100
(RNase_P_p30);(RNase_P_Rpp14)	1	10	10	11	11	10	966	100	20	91
(RNase_P_p30);(RNase_P_Rpp14)	2	10	10	11	11	10	659	100	20	91
(RNase_P_p30);(RNase_P-MRP_p29)	1	8	8	9	9	12	1679	100	0	89
(RNase_P-MRP_p29);(Rpr2)	1	7	7	11	11	9	1231	100	14	64
(Nucleoporin_C);(Nup84_Nup100)	1	5	5	5	5	5	796	100	60	100
(Alpha_E1_glycop);(Alpha_E2_glycop)	1	20	22	24	26	33	1154	100	18	83
(Alpha_E1_glycop);(Alpha_E2_glycop)_(Alpha_E1_glycop)	1	27	27	27	27	15	2658	100	0	100
(Alpha_E1_glycop);(Alpha_E2_glycop)_(Alpha_E1_glycop)	2	23	23	27	27	15	542	100	0	85
(Aminotran_1_2);(SPT_ssu-like)	1	21	21	21	21	35	890	100	0	100
(AMO);(AmoC)	1	9	9	14	18	78	2995	100	11	64
(AMO);(AmoC)	2	7	7	14	18	78	787	100	0	50
(AMO);(Monooxygenase_B)	1	12	13	14	18	46	3867	100	31	86
(AMO);(Monooxygenase_B)	2	12	13	14	18	46	615	92	31	86
(AmoC);(Monooxygenase_B)	1	9	9	14	18	72	771	100	11	64
(ubiquitin);(UQ_con)	1	32	33	71	83	23	807	100	55	45
(ubiquitin);(UQ_con)	2	19	23	71	83	1	276	91	35	27
(ubiquitin);(UQ_con)	3	17	19	71	83	0	709	63	47	24
(CDC45);(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)	1	17	17	17	17	22	768	100	53	100
(CDC45);(MCM2_N)_(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)	1	16	16	16	16	22	534	100	56	100
(CDC45);(Sld5)	1	15	15	16	16	22	265	100	47	94
(CDC45);(Sld5)_(SLD5_C)	1	13	13	13	13	25	850	100	38	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)	1	17	17	17	17	27	574	100	53	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)	2	17	17	17	17	15	433	100	53	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)	3	13	13	17	17	15	362	100	46	76
(Sld5);(Sld5)_(SLD5_C)	1	15	16	15	16	6	1355	100	50	100
(Sld5);(Sld5)_(SLD5_C)	2	13	14	15	16	18	1973	100	43	87
(Sld5);(Sld5)_(SLD5_C)	4	8	9	15	16	18	259	100	56	53
(Hormone_recep);(SRC-1)	1	14	23	67	461	7	667	100	96	21
(ANATO)_(A2M)_(TED_complement)_(A2M_recep)_(NTR);(MG1)_(MG2) _(MG3)_(MG4)_(A2M_BRD)	1	7	9	7	9	28	4494	100	100	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	11	13	11	13	84	8022	100	62	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(zf-dskA_traR)	1	14	14	14	14	21	1680	100	14	100
(RnaseA);(V-set)	1	8	12	8	12	89	581	100	75	100
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan);(PMP22_Claudin)	1	14	14	16	16	58	702	100	29	88
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan);(PMP22_Claudin)	2	13	13	16	16	58	530	100	31	81
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan);(ANF_receptor)_( Lig_chan-Glu_bd)_(Lig_chan)_(CaM_bdg_C0)	1	10	10	16	16	69	2304	100	0	62
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan);(ANF_receptor)_( Lig_chan-Glu_bd)_(Lig_chan)_(CaM_bdg_C0)	2	10	10	16	16	69	3064	100	0	62
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(CaM_bdg_C0);(AN F_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(NMDAR2_C)	1	25	25	26	26	57	2106	100	0	96
(Sec1);(Vps16_C)	1	5	5	5	5	28	2079	100	80	100
(SipA_VBS);(Vinculin)	1	6	6	6	6	10	1157	100	100	100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)	1	5	9	5	9	43	626	100	44	100
(T6SS_VipA);(VipB)_(VipB_2)	1	8	8	8	8	15	2803	100	50	100
(T6SS_VipA);(VipB)_(VipB_2)	2	5	5	8	8	26	718	100	60	62
(Kinesin);(Tubulin)_(Tubulin_C)	1	46	46	88	88	23	671	100	17	52
(Kinesin);(Tubulin)_(Tubulin_C)	2	33	33	88	88	23	780	97	33	38
(Kinesin);(Tubulin)_(Tubulin_C)	4	8	8	88	88	29	640	100	62	9
(Stathmin);(Tubulin)_(Tubulin_C)	1	11	258	11	300	56	650	100	78	100
(Stathmin);(Tubulin)_(Tubulin_C)	2	11	257	11	300	2	1541	100	78	100
(Stathmin);(Tubulin)_(Tubulin_C)	3	9	264	11	300	88	678	100	77	82
(Stathmin);(Tubulin)_(Tubulin_C)	4	9	262	11	300	88	783	100	77	82
(Skp1_POZ);(ubiquitin)	1	43	103	43	107	2	943	99	76	100
(ubiquitin);(zf-C3HC4_3)	1	8	8	8	9	26	385	100	50	100
(Thrombin_light);(Trypsin)	1	96	364	96	447	9	1153	100	99	100
(Thrombin_light);(Trypsin)	2	18	27	96	447	75	261	4	11	19
(Thrombin_light);(Trypsin)	3	10	176	96	447	31	207	0	0	10
(Thrombin_light);(Trypsin)	4	7	18	96	447	75	352	0	0	7
(Thrombin_light);(Trypsin)	5	6	6	96	447	74	599	0	17	6
(Thrombin_light);(Trypsin)	6	5	17	96	447	3	397	6	6	5
(Proteasom_Rpn13);(ubiquitin)	1	5	7	5	8	50	449	100	0	100
(ubiquitin);(UCH)	1	25	32	28	41	4	1692	100	97	89
(Ribosomal_L11_N)_(Ribosomal_L11);(Ribosomal_L37)	1	17	17	22	22	23	1504	100	12	77
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)	1	29	29	29	29	38	2645	100	24	100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	1	21	21	23	23	36	370	100	19	91
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	2	15	15	23	23	22	394	100	27	65
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	3	12	12	23	23	30	373	100	8	52
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)	1	48	48	52	52	26	395	100	29	92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)	2	48	48	52	52	31	392	100	27	92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)	3	43	43	52	52	60	483	100	30	83
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)	4	15	15	52	52	31	299	100	33	29
(ORC2);(ORC3_N)_(ORC3_ins)_(ORC_WH_C)	1	12	12	19	19	11	2579	100	17	63
(LRR_9);(LSM)	1	16	16	18	18	4	386	100	12	89
(Mpp10);(Ribosomal_S4)_(S4)	1	16	16	16	16	43	988	100	0	100
(HlyD_D23);(OEP)_(OEP)	1	8	8	9	9	7	527	100	75	89
(HlyD_D23);(OEP)_(OEP)	2	8	8	9	9	7	223	100	75	89
(HlyD_D23);(OEP)_(OEP)	3	8	8	9	9	19	287	100	75	89
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	1	73	73	131	131	13	749	100	51	56
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	2	71	71	131	131	13	1199	100	63	54
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	3	66	66	131	131	12	599	100	9	50
(Ribosomal_L28);(Ribosomal_L9_N)	1	19	19	28	28	6	351	95	11	68
(ANAPC2);(Apc1_N)_(APC1_C)	1	11	11	11	11	79	2378	100	36	100
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)	1	33	33	57	58	31	316	100	27	58
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)	3	12	12	57	58	31	287	100	0	21
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)	4	11	11	57	58	31	286	100	36	19
(DSS1_SEM1);(PCI)_(Rpn3_C)	1	24	24	41	41	34	965	100	0	59
(DSS1_SEM1);(PCI)_(Rpn3_C)	2	16	16	41	41	31	808	100	31	39
(DSS1_SEM1);(RPN7)_(PCI)	1	32	32	57	57	0	952	100	3	56
(DSS1_SEM1);(RPN7)_(PCI)	2	25	25	57	57	37	851	100	56	44
(JAB)_(MitMem_reg);(PCI)_(Rpn3_C)	1	39	39	52	52	31	789	100	18	75
(JAB)_(MitMem_reg);(PCI)_(Rpn3_C)	2	8	8	52	52	32	1325	100	100	15
(JAB)_(MitMem_reg);(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	19	19	35	35	66	329	100	16	54
(JAB)_(MitMem_reg);(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	2	15	15	35	35	66	567	100	40	43
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	1	27	27	58	58	43	590	100	37	47
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	2	23	23	58	58	43	510	100	26	40
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	3	22	22	58	58	43	507	100	0	38
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	4	20	20	58	58	43	485	100	0	34
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	5	14	14	58	58	43	557	100	57	24
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	6	9	9	58	58	43	493	100	56	16
(JAB)_(MitMem_reg);(RPN7)_(PCI)	1	48	49	62	63	4	426	100	18	77
(JAB)_(MitMem_reg);(RPN7)_(PCI)	2	14	14	62	63	37	404	100	57	23
(PCI)_(Rpn3_C);(RPN7)_(PCI)	1	51	51	51	51	27	1261	100	29	100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(PCI)_(Rpn3_C)	1	9	9	20	20	32	511	100	44	45
(PCI)_(Rpn9_C);(VWA_2)	1	13	13	25	25	31	662	100	23	52
(Apocytochr_F_N)_(Apocytochr_F_C);(Cytochrom_B_C)	1	6	8	6	15	55	1167	100	88	100
(Apocytochr_F_N)_(Apocytochr_F_C);(PetL)	1	5	6	6	15	21	364	100	83	83
(Apocytochr_F_N)_(Apocytochr_F_C);(PetN)	1	5	6	6	15	48	728	100	83	83
(Cytochrom_B_C);(Cytochrome_B)	1	6	15	6	15	74	3085	100	93	100
(Cytochrom_B_C);(PetG)	1	5	13	6	15	51	844	100	92	83
(Proteasome_A_N)_(Proteasome);(RPN6_N)_(PCI)_(RPN6_C_helix)	1	19	19	38	38	43	711	100	26	50
(Proteasome_A_N)_(Proteasome);(RPN6_N)_(PCI)_(RPN6_C_helix)	2	10	10	38	38	43	523	100	30	26
(PCI)_(Rpn3_C);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	17	17	22	22	31	628	100	35	77
(ATP-synt_A);(Mt_ATP-synt_B)	1	32	32	39	39	6	713	100	19	82
(ATP-synt_A);(Mt_ATP-synt_D)	1	22	22	32	32	85	360	100	27	69
(ATP-synt);(IATP)	1	15	15	24	27	30	386	100	27	62
(ATP-synt_8);(Mt_ATP-synt_D)	1	11	11	23	23	4	456	100	45	48
(ATP-synt_B);(OSCP)	2	12	12	27	27	27	686	100	0	44
(Ribosomal_L14e);(Ribosomal_L18A)	1	25	25	27	27	14	1066	100	8	93
(Ribosomal_L24e);(Ribosomal_S6e)	1	82	95	93	106	1	801	76	2	88
(eIF-1a);(Ribosomal_S30)	1	7	7	10	10	46	445	86	14	70
(eIF-5_eIF-2B);(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C)	1	22	23	23	24	8	835	100	43	96
(Cytochrom_B_C);(PetN)	1	5	13	6	15	48	476	100	92	83
(Cytochrome_B);(PetG)	1	5	13	6	15	51	762	100	92	83
(PetG);(PetM)	1	5	13	6	15	29	424	100	92	83
(PetL);(PetM)	1	5	13	6	15	11	327	100	92	83
(PetL);(PetN)	1	5	13	6	15	21	469	100	92	83
(PetM);(PetN)	1	5	13	6	15	29	529	100	92	83
(BMC);(BMC)_(BMC)	1	6	6	7	7	16	306	100	0	86
(BMC);(BMC)_(BMC)	2	6	6	7	7	18	268	100	0	86
(CP12);(Gp_dh_N)_(Gp_dh_C)	1	9	12	9	12	32	732	100	100	100
(CP12);(Gp_dh_N)_(Gp_dh_C)	2	9	12	9	12	32	288	92	100	100
(Med17);(Med6)	1	11	11	13	13	4	707	100	18	85
(Med6);(Med8)	1	10	10	10	10	4	883	100	20	100
(HCV_NS1);(V-set_2)_(C1-set)	1	6	6	11	11	77	481	0	0	55
(HCV_NS1);(V-set_2)_(C1-set)	2	5	5	11	11	79	646	100	100	45
(HCV_NS1);(V-set_2)_(C1-set)	3	5	5	11	11	21	1023	100	100	45
(Arabino_trans_N)_(Arabinose_trans)_(Arabino_trans_C);(PP-bi nding)	1	5	5	7	7	42	850	100	0	71
(MazE_antitoxin);(PIN)	1	6	6	9	9	24	1290	100	100	67
(C1-set);(V-set)_(C1-set)	1	14	14	94	195	21	1687	100	86	15
(C1-set);(V-set)_(C1-set)	2	5	6	94	195	77	340	0	0	5
(MHC_I)_(C1-set);(V-set)_(C1-set)	1	100	200	133	253	24	451	98	50	75
(MHC_I)_(C1-set);(V-set)_(C1-set)	2	14	24	133	253	58	261	0	4	11
(MHC_I)_(C1-set);(V-set)_(C1-set)	3	7	10	133	253	66	354	10	10	5
(MHC_I)_(C1-set);(V-set)_(C1-set)	4	6	9	133	253	69	246	0	0	5
(MHC_I)_(C1-set);(V-set)_(DUF1968)	1	111	227	119	238	36	482	95	52	93
(MHC_I)_(C1-set);(V-set)_(DUF1968)	2	7	11	119	238	58	258	0	0	6
(V-set)_(C1-set);(V-set)_(DUF1968)	1	270	504	271	517	7	1922	100	91	100
(V-set)_(C1-set);(V-set)_(DUF1968)	2	10	14	271	517	55	377	0	0	4
(V-set)_(C1-set);(V-set)_(DUF1968)	3	9	10	271	517	22	698	10	20	3
(V-set)_(C1-set);(V-set)_(DUF1968)	4	8	12	271	517	54	815	8	8	3
(V-set)_(C1-set);(V-set)_(DUF1968)	5	7	9	271	517	59	389	0	0	3
(V-set);(V-set)_(C1-set)	1	25	30	65	87	10	530	80	27	38
(V-set);(V-set)_(C1-set)	2	18	20	65	87	15	426	60	35	28
(V-set);(V-set)_(C1-set)	3	17	18	65	87	19	366	44	17	26
(V-set);(V-set)_(C1-set)	4	10	10	65	87	15	387	60	20	15
(V-set);(V-set)_(C1-set)	5	8	8	65	87	52	443	75	38	12
(V-set);(V-set)_(C1-set)	6	6	6	65	87	16	438	50	50	9
(V-set);(V-set)_(C1-set)	7	5	7	65	87	9	363	57	14	8
(NDUF_B4);(Peptidase_M16)_(Peptidase_M16_C)	1	7	7	7	7	75	305	100	0	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	245	315	255	325	9	1536	100	48	96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	52	74	55	78	47	2751	100	43	95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	2	8	22	55	78	89	859	0	0	15
(Tim17);(UcrQ)	1	7	7	7	7	69	355	100	0	100
(2Fe-2S_thioredx);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Moly bdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	12	12	12	12	52	830	100	33	100
(Complex1_30kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molyb dop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	12	12	12	12	47	553	100	33	100
(Complex1_49kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molyb dop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	12	12	12	12	52	911	100	33	100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(Fer2_4)_(NADH-G_4Fe-4S_ 3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	12	12	12	12	52	1468	100	33	100
(Complex1_LYR);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdo p_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	12	12	12	12	27	480	100	33	100
(ETC_C1_NDUFA4);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybd op_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	11	11	11	11	29	1952	100	27	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(Fer4_7)	1	12	12	12	12	52	525	100	33	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(L51_S25_CI-B8)	1	12	12	12	12	33	1174	100	33	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(NDUFA12)	1	12	12	12	12	33	695	100	33	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(zf-CHCC)	1	12	12	12	12	31	461	100	33	100
(NDUF_C2);(Proton_antipo_M)	1	10	10	10	10	22	1193	100	20	100
(Ndufs5);(Proton_antipo_M)	1	9	9	9	9	23	500	100	22	100
(Oxidored_q2);(Proton_antipo_M)	1	22	27	22	27	5	1531	100	44	100
(Oxidored_q3);(Proton_antipo_M)	1	20	25	20	25	0	1098	100	48	100
(Oxidored_q4);(Proton_antipo_M)	1	18	23	20	25	21	334	100	52	90
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)	1	9	9	9	9	23	1553	100	33	100
(Proton_antipo_M);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5 _C)	1	10	10	12	12	21	1028	100	50	83
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)	1	11	11	16	21	17	1622	100	9	69
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)	2	5	10	16	21	27	466	100	70	31
(Mt_ATP-synt_B);(Mt_ATP-synt_D)	1	47	47	48	48	3	1505	100	32	98
(ATP-synt_F6);(Mt_ATP-synt_B)	1	21	21	29	29	4	1274	100	33	72
(ATP-synt_F6);(Mt_ATP-synt_D)	1	18	18	27	27	80	440	100	39	67
(ATP1G1_PLM_MAT8);(Cation_ATPase_N)_(E1-E2_ATPase)_(Cation_A TPase)_(Cation_ATPase_C)	1	10	45	25	66	29	774	100	89	40
(ATP1G1_PLM_MAT8);(Na_K-ATPase)	1	13	48	26	67	29	337	100	85	50
(ATP1G1_PLM_MAT8);(Na_K-ATPase)	2	12	12	26	67	66	432	100	0	46
(Cation_ATPase_N)_(E1-E2_ATPase)_(Cation_ATPase)_(Cation_ATP ase_C);(Na_K-ATPase)	1	33	72	33	79	30	2034	100	67	100
(CR6_interact);(Img2)	1	5	5	10	16	76	209	100	20	50
(CR6_interact);(MRP-L51)	1	30	33	30	39	76	423	100	12	100
(CR6_interact);(Ribosomal_L27A)	1	29	32	29	38	76	1065	100	12	100
(CR6_interact);(Ribosomal_L28)	1	29	32	29	38	76	384	100	12	100
(CR6_interact);(Ribosomal_L33)	1	29	32	29	38	76	481	100	12	100
(CR6_interact);(Ribosomal_L4)	1	29	32	29	38	76	459	100	12	100
(Img2);(MRP-63)	1	30	33	30	39	72	594	100	12	100
(Img2);(Ribosomal_L27A)	1	29	32	34	43	87	1377	100	12	85
(Img2);(Ribosomal_L4)	1	39	42	44	53	4	824	98	12	89
(KOW)_(ribosomal_L24);(MRP-L27)	1	30	33	30	39	22	1353	100	12	100
(KOW)_(ribosomal_L24);(MRP-L47)	1	36	39	36	45	7	1700	100	13	100
(KOW)_(ribosomal_L24);(Ribosomal_L23)	1	31	34	36	45	81	786	100	15	86
(L51_S25_CI-B8);(MRP-63)	1	30	33	30	39	72	370	100	12	100
(L51_S25_CI-B8);(MRP-S32)	1	30	33	30	39	8	669	100	15	100
(L51_S25_CI-B8);(Ribonucleas_3_3)_(dsrm)	1	30	33	34	43	88	1492	100	15	88
(L51_S25_CI-B8);(Ribosomal_L13)	1	39	42	43	52	18	783	98	12	91
(L51_S25_CI-B8);(Ribosomal_L20)	1	31	34	31	40	22	595	100	12	100
(L51_S25_CI-B8);(Ribosomal_L21p)	1	41	44	45	54	0	1286	98	11	91
(L51_S25_CI-B8);(Ribosomal_L22)	1	9	9	13	13	25	365	89	11	69
(L51_S25_CI-B8);(Ribosomal_L50)	1	30	33	39	48	80	687	100	15	77
(L51_S25_CI-B8);(Ribosomal_L50)	2	9	9	39	48	9	753	89	11	23
(Mitoc_L55);(MRP-L28)	1	28	31	28	37	70	830	100	13	100
(Mitoc_L55);(MRP-L46)	1	28	31	28	37	70	1214	100	13	100
(Mitoc_L55);(Ribosomal_S10)	1	28	31	28	37	70	923	100	13	100
(MRP_L53);(Ribosomal_L10)	1	29	32	29	38	85	844	100	12	100
(MRP_L53);(Ribosomal_S18)	1	30	33	30	39	85	509	100	12	100
(MRP-63);(MRPL52)	1	30	33	30	39	72	385	100	12	100
(MRP-63);(Ribosomal_L10)	1	29	32	29	38	72	497	100	12	100
(MRP-63);(Ribosomal_L16)	1	29	32	29	38	72	323	100	12	100
(MRP-63);(Ribosomal_L27A)	1	29	32	29	38	72	521	100	12	100
(MRP-63);(Ribosomal_L30)	1	29	32	29	38	72	1222	100	12	100
(MRP-63);(Ribosomal_S18)	1	24	24	24	30	72	250	100	4	100
(MRP-L27);(MRP-L47)	1	36	39	40	49	22	1651	100	13	90
(MRP-L27);(Ribosomal_L23)	1	38	41	38	47	5	1457	98	12	100
(MRP-L27);(Ribosomal_L28)	1	29	32	29	38	77	503	100	12	100
(MRP-L27);(Ribosomal_L34)	1	38	41	38	47	22	438	98	12	100
(MRP-L28);(MRP-L46)	1	35	38	35	44	11	2236	100	16	100
(MRP-L28);(PBP)	1	9	9	13	13	22	876	89	11	69
(MRP-L28);(Ribosomal_S10)	1	30	33	30	39	72	1740	100	15	100
(MRP-L46);(Ribosomal_S10)	1	30	33	30	39	76	361	100	15	100
(MRP-L47);(MRP-L51)	1	29	32	29	38	82	234	100	12	100
(MRP-L47);(PDCD9)	1	29	32	29	38	83	561	100	12	100
(MRP-L47);(Ribosomal_L23)	1	45	48	45	54	2	1785	98	12	100
(MRP-L47);(Ribosomal_L28)	1	30	33	30	39	83	451	100	15	100
(MRP-L47);(Ribosomal_L34)	1	30	33	30	39	83	518	100	15	100
(MRP-L51);(Ribonucleas_3_3)_(dsrm)	1	30	33	30	39	82	368	100	12	100
(MRP-L51);(Ribosomal_L27A)	1	29	32	29	38	82	290	100	12	100
(MRP-L51);(Ribosomal_L28)	1	29	32	29	38	82	326	100	12	100
(MRP-L51);(Ribosomal_L35p)	1	29	32	29	38	80	399	100	12	100
(MRP-L51);(Ribosomal_L4)	1	29	32	29	38	82	1829	100	12	100
(MRPL52);(PBP)	1	10	10	15	21	81	503	100	10	67
(MRPL52);(Ribosomal_L20)	1	29	32	29	38	81	394	100	12	100
(MRPL52);(Ribosomal_L21p)	1	31	34	31	40	7	668	100	12	100
(MRPL52);(Ribosomal_L30)	1	29	32	31	40	81	1056	100	12	94
(MRP-S32);(Ribonucleas_3_3)_(dsrm)	1	29	32	29	38	69	680	100	16	100
(MRP-S32);(Ribosomal_L13)	1	29	32	29	38	30	294	100	12	100
(MRP-S32);(Ribosomal_L20)	1	28	31	28	37	69	866	100	13	100
(MRP-S32);(Ribosomal_L21p)	1	28	31	28	37	69	809	100	13	100
(MRP-S32);(Ribosomal_L22)	1	29	32	29	38	69	413	100	12	100
(PBP);(RF-1)	1	31	34	31	40	77	958	100	12	100
(PBP);(Ribosomal_L18p)	1	30	33	30	39	88	2744	100	12	100
(PBP);(Ribosomal_L27)	1	29	32	36	45	87	1811	100	12	81
(PBP);(Ribosomal_L27A)	1	29	32	34	43	88	255	100	12	85
(PBP);(Ribosomal_L35p)	1	29	32	29	38	80	1116	100	12	100
(PBP);(Ribosomal_S10)	1	30	33	30	39	76	644	100	12	100
(PDCD9);(Ribosomal_L17)	1	27	30	27	36	82	368	100	13	100
(PDCD9);(Ribosomal_L2)_(Ribosomal_L2_C)	1	29	32	29	38	85	777	100	12	100
(PDCD9);(Ribosomal_L23)	1	29	32	29	38	81	532	100	12	100
(PDCD9);(Ribosomal_L28)	1	29	32	29	38	83	825	100	12	100
(RF-1);(Ribosomal_L18p)	1	28	31	28	37	77	446	100	13	100
(RF-1);(Ribosomal_L27A)	1	30	33	30	39	77	1553	100	12	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L13)	1	33	36	33	42	14	807	97	11	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L20)	1	29	32	29	38	87	374	100	12	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L21p)	1	29	32	29	38	77	319	100	12	100
(Ribosomal_L10);(Ribosomal_L16)	1	32	35	32	41	85	1231	100	14	100
(Ribosomal_L10);(Ribosomal_L37)	1	16	16	16	22	76	255	100	6	100
(Ribosomal_L10);(Ribosomal_S18)	1	29	32	30	39	85	236	100	9	97
(Ribosomal_L13);(Ribosomal_L22)	1	43	46	48	57	21	523	98	13	90
(Ribosomal_L13);(Ribosomal_S18)	1	30	33	30	39	85	2360	100	12	100
(Ribosomal_L16);(Ribosomal_L30)	1	31	34	31	40	81	427	100	15	100
(Ribosomal_L16);(Ribosomal_L37)	1	27	29	28	37	20	393	100	10	96
(Ribosomal_L17);(Ribosomal_L19)	1	29	32	29	38	80	637	100	16	100
(Ribosomal_L17);(TGS)_(tRNA_SAD)	1	27	30	27	36	89	746	100	13	100
(Ribosomal_L20);(Ribosomal_L22)	1	31	34	31	40	86	273	100	15	100
(Ribosomal_L21p);(Ribosomal_S18)	1	30	33	30	39	77	526	100	12	100
(Ribosomal_L22);(TGS)_(tRNA_SAD)	1	30	33	30	39	78	357	100	12	100
(Ribosomal_L27);(Ribosomal_S10)	1	30	33	30	39	76	395	100	12	100
(Ribosomal_L3);(TGS)_(tRNA_SAD)	1	30	33	30	39	82	575	100	12	100
(Ribosomal_L32p);(TGS)_(tRNA_SAD)	1	29	32	29	38	85	256	100	12	100
(Ribosomal_L4);(Ribosomal_L50)	1	29	32	38	47	80	1054	100	12	76
(Ribosomal_L4);(Ribosomal_L50)	2	9	9	38	47	9	1602	89	11	24
(B);(C1-set)_(C1-set)	1	9	13	9	13	29	715	92	69	100
(PrgH);(YscJ_FliF)	1	12	12	15	15	19	912	100	0	80
(G-alpha);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	8	8	8	8	51	1170	100	50	100
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	19	29	19	31	31	2229	100	79	100
(Fer4_7);(PsaA_PsaB)	1	34	39	35	40	0	802	100	38	97
(Fer4_7);(PsaA_PsaB)	2	34	39	35	40	3	407	100	36	97
(Bcl-2);(BID)	1	10	12	10	13	15	846	92	83	100
(Bcl-2);(PUMA)	1	8	9	9	10	12	940	100	78	89
(Bclx_interact);(BH4)_(Bcl-2)	1	13	14	13	14	10	1006	100	100	100
(eIF-3_zeta);(Ribosomal_S28e)	1	8	8	8	8	60	543	100	0	100
(eIF-3_zeta);(Ribosomal_S7)	1	8	8	8	8	60	731	100	0	100
(eIF-3c_N)_(PCI);(PCI)	1	8	8	10	10	14	1704	100	38	80
(bCoV_S1_N)_(bCoV_S1_RBD);(Peptidase_M2)	1	28	36	29	37	8	779	100	33	97
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	1	64	89	131	185	5	509	47	22	49
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	2	32	39	131	185	8	694	100	36	24
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	3	30	37	131	185	8	455	100	46	23
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	4	24	29	131	185	3	352	93	28	18
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	5	14	15	131	185	13	581	93	47	11
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	6	14	14	131	185	52	504	86	14	11
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	7	13	33	131	185	8	427	85	42	10
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	8	13	13	131	185	11	283	100	38	10
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	9	10	12	131	185	13	513	100	33	8
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	10	10	13	131	185	75	453	100	38	8
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	11	8	10	131	185	13	601	90	40	6
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	12	8	8	131	185	67	636	100	38	6
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	13	7	14	131	185	11	391	93	43	5
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	14	7	8	131	185	71	369	100	38	5
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	15	7	7	131	185	11	521	29	14	5
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	16	6	6	131	185	60	460	83	0	5
(bCoV_S1_N)_(bCoV_S1_RBD);(Peptidase_M2)_(Collectrin)	1	5	5	9	9	70	944	100	0	56
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)	1	17	20	35	50	13	656	70	40	49
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)	2	9	12	35	50	13	591	75	25	26
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)	3	6	8	35	50	70	686	100	25	17
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)	1	50	50	62	62	24	1409	100	16	81
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(V-set)	1	7	8	10	11	49	688	62	25	70
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)	1	17	25	56	90	9	675	92	28	30
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)	2	15	18	56	90	11	549	11	0	27
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)	3	12	16	56	90	11	618	100	44	21
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)	4	10	10	56	90	26	576	100	20	18
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)	5	9	12	56	90	10	327	100	25	16
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(Peptidase_M2)	1	20	29	24	33	9	867	100	41	83
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	1	42	42	215	215	12	593	100	5	20
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	2	31	31	215	215	12	546	100	10	14
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	3	28	28	215	215	12	688	100	21	13
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	4	27	27	215	215	13	519	100	4	13
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	5	24	24	215	215	12	554	100	8	11
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	6	24	24	215	215	12	402	100	0	11
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	7	19	19	215	215	25	722	100	5	9
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	8	16	16	215	215	12	575	100	0	7
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	9	15	15	215	215	26	538	100	7	7
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	11	10	10	215	215	79	592	100	0	5
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	12	8	8	215	215	26	344	100	0	4
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	13	8	8	215	215	25	329	100	0	4
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	14	8	8	215	215	43	473	100	0	4
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	15	8	8	215	215	26	428	100	0	4
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	16	6	6	215	215	38	835	100	0	3
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	17	6	6	215	215	26	620	100	0	3
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(Peptidase_M2)	1	62	62	85	85	11	1082	100	2	73
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(Peptidase_M2)	2	19	19	85	85	12	1074	100	21	22
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	1	64	64	209	209	11	478	100	6	31
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	2	34	34	209	209	12	431	100	9	16
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	3	28	28	209	209	12	388	100	0	13
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	4	25	25	209	209	12	608	100	4	12
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	5	23	23	209	209	12	503	100	4	11
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	6	22	22	209	209	12	416	100	18	11
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	7	18	18	209	209	13	514	100	6	9
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	8	14	14	209	209	12	614	100	0	7
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	9	13	13	209	209	12	592	100	23	6
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	10	12	12	209	209	13	521	100	0	6
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	11	9	9	209	209	69	550	100	33	4
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	13	8	8	209	209	13	889	100	0	4
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	14	6	6	209	209	28	583	100	0	3
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	15	6	6	209	209	74	412	100	0	3
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	16	5	5	209	209	25	480	100	0	2
(bCoV_S1_RBD);(Peptidase_M2)	1	5	7	9	17	10	879	100	0	56
(bCoV_S1_RBD);(V-set)_(C1-set)	1	9	9	21	22	8	514	100	22	43
(Beta-lactamase2);(BLIP)	1	5	12	8	15	67	1218	100	100	62
(Skp1_POZ);(VHL)_(VHL_C)	1	22	74	22	80	4	1004	100	77	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	1	8	39	8	39	6	1735	100	100	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	2	8	39	8	39	26	1615	100	100	100
(LRR_9);(RRM_1)	1	23	23	23	23	24	549	100	13	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_5);(RNA_pol_Rpb6)	1	9	17	11	19	80	2102	100	71	82
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)	1	101	114	101	114	2	491	82	15	100
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	93	106	95	108	35	243	80	14	98
(Ribosomal_L22);(Ribosomal_L6e)	1	6	6	7	7	82	266	100	0	86
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)	1	30	30	33	33	47	219	90	17	91
(Ribosomal_L32e);(Ribosomal_L6e)	1	95	108	95	108	2	511	81	15	100
(Ribosomal_L35Ae);(Ribosomal_L6e)	1	108	121	108	121	2	859	83	15	100
(Ribosomal_S19e);(Ribosomal_S7)	1	7	7	11	11	79	265	100	43	64
(Ribosomal_S17e);(Ribosomal_S2)	1	74	87	74	87	2	955	75	8	100
(Ribosomal_S2);(Ribosomal_S21e)	1	75	88	75	88	0	1506	75	9	100
(ABC_tran);(FecCD)	1	6	8	6	8	22	1097	100	100	100
(ABC_tran);(STAS_2)	1	13	13	19	19	25	824	100	46	68
(ABC_tran);(STAS_2)	2	13	13	19	19	25	316	92	46	68
(MlaD);(MlaE)	1	16	16	17	17	41	563	100	25	94
(MlaD);(MlaE)	2	15	15	17	17	41	951	100	27	88
(MlaD);(MlaE)	3	13	13	17	17	48	327	100	23	76
(MlaD);(MlaE)	4	7	7	17	17	48	386	100	29	41
(Fibrillarin);(Nop)	1	12	15	12	15	2	1470	100	80	100
(Nop);(Ribosomal_L7Ae)	1	12	15	12	15	24	607	100	73	100
(Brix);(RRS1)	1	8	8	8	8	37	2440	100	50	100
(LON_substr_bdg)_(Yippee-Mis18);(MMS1_N)_(CPSF_A)	1	12	19	19	27	60	2353	100	84	63
(ABC_tran)_(OB_MalK)_(TOBE_2);(BPD_transp_1)	1	7	17	7	17	12	823	100	94	100
(IL12p40_C)_(fn3);(IL23)	1	11	11	11	11	13	955	100	100	100
(GP120);(GP41)	1	122	136	122	140	0	2033	99	28	100
(GP120);(GP41)	2	12	12	122	140	66	230	100	33	10
(GP120);(V-set)_(C1-set)	1	52	72	226	288	16	267	100	57	23
(GP120);(V-set)_(C1-set)	2	37	48	226	288	12	893	100	46	16
(GP120);(V-set)_(C1-set)	3	24	34	226	288	19	316	94	15	11
(GP120);(V-set)_(C1-set)	4	24	34	226	288	58	296	94	18	11
(GP120);(V-set)_(C1-set)	5	15	27	226	288	4	587	100	26	7
(GP120);(V-set)_(C1-set)	6	10	11	226	288	72	650	100	0	4
(GP120);(V-set)_(C1-set)	7	7	15	226	288	56	240	7	0	3
(GP120);(V-set)_(C1-set)	8	7	7	226	288	75	470	100	0	3
(GP120);(V-set)_(C1-set)	9	7	7	226	288	68	391	100	29	3
(GP120);(V-set)_(C1-set)	10	6	6	226	288	25	508	100	50	3
(GP120);(V-set)_(C1-set)	11	5	6	226	288	42	382	100	100	2
(GP120);(V-set)_(C1-set)	12	5	5	226	288	51	326	80	0	2
(GP120);(V-set)_(C1-set)	13	5	5	226	288	20	647	100	80	2
(GP120);(V-set)_(C1-set)	14	5	5	226	288	12	411	100	80	2
(GP41);(V-set)_(C1-set)	1	10	11	117	150	64	296	100	9	9
(GP41);(V-set)_(C1-set)	2	9	10	117	150	64	260	100	0	8
(GP41);(V-set)_(C1-set)	3	8	10	117	150	0	685	100	100	7
(GP41);(V-set)_(C1-set)	4	8	9	117	150	6	399	78	22	7
(GP41);(V-set)_(C1-set)	5	7	7	117	150	52	473	100	14	6
(RNA_POL_M_15KD)_(TFIIS_C);(TFIIF_alpha)	1	10	12	13	15	19	276	100	8	77
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)	1	23	26	23	26	33	2087	100	19	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	23	26	23	26	33	1743	100	15	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_alpha)	1	19	21	19	21	17	1204	100	10	100
(GP120);(V-set)	1	10	10	29	30	42	268	100	0	34
(GP120);(V-set)	2	10	10	29	30	43	967	100	20	34
(GP120);(V-set)	3	9	9	29	30	59	279	100	0	31
(GP120);(V-set)	4	8	8	29	30	68	324	100	0	28
(HCV_NS1);(V-set)_(C1-set)	1	7	7	35	39	76	711	100	86	20
(F_actin_cap_B);(F-actin_cap_A)	1	24	28	24	28	10	3543	100	75	100
(Pico_P1A);(Rhv)	1	151	236	158	252	0	923	100	38	96
(Pico_P1A);(Rhv)	2	132	204	158	252	0	565	100	34	84
(Actin);(Myosin_N)_(Myosin_head)	1	6	6	6	6	38	710	100	0	100
(Actin);(WH2)	1	9	11	9	11	27	996	100	100	100
(C1-set);(MHC_I_3)_(C1-set)	1	47	151	47	156	11	1232	100	96	100
(MHC_I_3)_(C1-set);(V-set)_(C1-set)	1	10	61	24	83	64	317	98	77	42
(MHC_I_3)_(C1-set);(V-set)_(DUF1968)	1	11	63	22	81	64	456	98	75	50
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	1	11	17	11	18	48	468	94	6	100
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	2	10	16	11	18	48	356	94	6	91
(ecTbetaR2);(TGF_beta)	1	5	5	5	5	76	486	80	60	100
(Rhv);(V-set)	1	11	11	52	52	6	567	100	0	21
(Rhv);(V-set)	3	7	7	52	52	81	304	100	0	13
(Rhv);(V-set)	7	5	5	52	52	83	406	100	0	10
(Ca_chan_IQ);(EF-hand_7)_(EF-hand_7)	1	9	15	11	19	10	1152	100	73	82
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_Penton_B)	1	8	8	9	9	63	1273	100	12	89
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PIX)	1	6	6	7	7	27	991	100	17	86
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PIX)	2	5	5	7	7	48	1249	100	20	71
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)	1	8	8	8	8	52	800	100	12	100
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)	2	8	8	8	8	52	473	100	12	100
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)	3	8	8	8	8	52	1422	100	12	100
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)	4	7	7	8	8	52	1307	100	14	88
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)	5	5	5	8	8	79	778	100	20	62
(Adeno_PVIII);(Hex_IIIa)	1	6	6	7	7	73	1334	100	17	86
(G-alpha);(HRM)_(7tm_2)	1	67	67	67	67	2	1039	100	0	100
(HRM)_(7tm_2);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	24	24	31	31	25	259	100	0	77
(Calici_coat);(CRPV_capsid)	1	24	24	25	25	7	3446	100	33	96
(Calici_coat);(Rhv)	1	23	24	23	24	10	1159	100	33	100
(CRPV_capsid);(Rhv)	1	21	21	25	25	6	1297	100	29	84
(CRPV_capsid);(Rhv)	2	6	6	25	25	6	3887	100	33	24
(Calici_coat);(Waikav_capsid_1)	1	6	6	6	6	21	1316	100	50	100
(CRPV_capsid);(Waikav_capsid_1)	1	7	7	7	7	18	1313	100	43	100
(Calici_coat)_(Calici_coat_C);(V-set)	1	9	12	24	28	13	602	83	17	38
(Calici_coat)_(Calici_coat_C);(V-set)	3	8	8	24	28	56	647	75	75	33
(Calici_coat)_(Calici_coat_C);(V-set)	4	7	10	24	28	17	441	50	10	29
(CarbopepD_reg_2)_(Plug)_(TonB_dep_Rec);(SusD-like_3)_(SusD_ RagB)	1	9	12	9	12	17	2560	100	75	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)	1	20	54	20	54	35	2595	100	46	100
(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol _Rpb2_6)_(RNA_pol_Rpb2_7);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma 70_r3)_(Sigma70_r4)	1	11	27	12	28	79	2139	100	74	92
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	62	120	70	128	30	1832	100	72	89
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	2	56	113	70	128	30	287	100	75	80
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (RNA_pol_Rpb6)	1	40	79	61	121	10	214	100	61	66
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	1	8	16	8	16	41	419	100	94	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	2	8	16	8	16	41	691	100	94	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	3	5	13	8	16	44	379	0	0	62
(Alba);(Rpp20)	1	10	10	10	10	7	805	100	30	100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	1	159	210	159	212	8	2052	100	97	100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	2	10	12	159	212	88	335	0	0	6
(CCDC23);(Vasohibin)	1	17	23	18	24	10	1213	100	91	94
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	1	18	86	27	125	11	3607	100	90	67
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	2	10	50	27	125	22	1083	74	68	37
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	3	9	23	27	125	17	1483	39	39	33
(Me-amine-dh_H);(Me-amine-dh_L)	1	16	66	16	69	12	1513	100	95	100
(Me-amine-dh_H);(Me-amine-dh_L)	2	16	66	16	69	12	1149	94	95	100
(CdhD);(FeS)_(CdhD)	1	5	6	5	6	10	2255	100	100	100
(CKS);(Pkinase)	1	9	13	9	13	65	710	100	46	100
(Cyclin_N)_(Cyclin_C);(Pkinase)	1	35	127	39	172	3	1364	99	91	90
(Cyclin_N)_(Cyclin_C);(Pkinase)	2	22	94	39	172	3	620	34	36	56
(Cyclin_N)_(Cyclin_C);(Pkinase)	4	5	21	39	172	88	451	0	0	13
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom _S12_S23)	1	30	34	37	41	4	331	100	0	81
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L11_N)_(Ribosomal_L11)	1	5	5	17	17	23	272	100	0	29
(IF3_N)_(IF3_C);(Ribosomal_S11)	1	6	6	6	6	79	277	100	33	100
(PsaA_PsaB);(PsaD)	1	57	63	58	69	5	797	100	29	98
(PsaA_PsaB);(PsaD)	2	57	64	58	69	5	701	100	31	98
(PsaA_PsaB);(PsaL)	1	53	60	54	65	21	540	100	28	98
(PsaA_PsaB);(PsaL)	2	44	50	54	65	21	358	100	30	81
(PsaA_PsaB);(PsaL)	3	12	15	54	65	42	232	100	40	22
(PsaA_PsaB);(PsaM)	1	35	40	36	41	34	961	100	32	97
(PsaA_PsaB);(PSI_8)	1	53	63	54	65	0	743	100	32	98
(PsaA_PsaB);(PSI_PsaE)	1	53	60	57	68	0	394	100	25	93
(PsaA_PsaB);(PSI_PsaE)	2	52	60	57	68	40	280	100	23	91
(PsaA_PsaB);(PSI_PsaF)	1	52	57	54	65	21	946	100	26	96
(PsaA_PsaB);(PSI_PsaF)	2	52	58	54	65	21	1061	100	29	96
(PsaA_PsaB);(PSI_PsaJ)	1	50	57	51	59	21	353	100	32	98
(PsaD);(PsaL)	1	41	48	45	56	5	468	100	33	91
(PsaL);(PSI_8)	1	39	44	44	52	0	259	100	32	89
(PsaL);(PSI_8)	2	15	20	44	52	41	256	80	55	34
(PsaM);(PSI_8)	1	27	32	30	35	0	226	100	41	90
(PSI_PsaE);(PSI_PsaF)	1	44	47	46	51	0	259	100	26	96
(PSI_PsaF);(PSI_PsaJ)	1	52	58	54	65	9	703	100	28	96
(Fer4_7);(PsaD)	1	34	39	35	40	2	1418	100	38	97
(Fer4_7);(PSI_PsaE)	1	34	39	35	40	40	536	100	26	97
(PsaA_PsaB);(PSI_PSAK)	1	47	55	50	61	3	630	100	22	94
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)	1	30	70	30	86	7	742	100	37	100
(Cytochrom_B559);(Photo_RC)	1	29	38	30	86	0	451	100	39	97
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	1	28	38	29	85	62	1294	100	37	97
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	2	27	41	29	85	62	303	100	44	93
(Photo_RC);(PSII)	1	30	83	30	86	17	1807	100	45	100
(Photo_RC);(PSII)	2	30	75	30	86	6	1851	100	39	100
(Cytochrom_C550);(Photo_RC)	1	18	28	19	75	54	557	100	57	95
(Cytochrom_C550);(Photo_RC)	2	7	13	19	75	55	210	100	54	37
(Cytochrom_C550);(PSII)	1	19	26	20	76	35	904	100	54	95
(Antistasin);(Trypsin)	1	6	6	6	6	24	625	100	100	100
(SecE);(SecY)	1	8	8	11	11	11	1693	100	62	73
(Ion_trans)_(Ion_trans)_(Ion_trans)_(Ion_trans)_(GPHH)_(Ca_c han_IQ);(VWA_N)_(VWA_3)_(VGCC_alpha2)	1	13	13	13	13	72	1825	100	23	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_ Rpb2_6)_(RNA_pol_Rpb2_7)	1	48	75	56	83	30	8026	100	53	86
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_ (RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	59	76	67	84	26	234	100	8	88
(Cohesin);(Dockerin_1)	1	11	11	16	19	4	626	73	73	69
(Cohesin);(Dockerin_1)	2	7	8	16	19	17	528	50	50	44
(Como_LCP);(Como_SCP)	1	10	12	10	12	37	1910	92	58	100
(ATP-synt_S1);(Renin_r)	1	13	13	13	13	83	624	100	0	100
(ATP-synt_A);(ATP-synt_B)	1	38	38	41	49	4	1483	100	3	93
(ATP-synt_A);(ATP-synt_B)	2	15	15	41	49	5	1072	100	0	37
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_B)	1	19	19	37	45	21	672	100	5	51
(CoV_NSP7);(CoV_NSP8)	1	51	54	60	64	4	1303	100	22	85
(CoV_NSP7);(CoV_RPol_N)_(RdRP_1)	1	53	53	53	53	11	805	100	15	100