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PDBfam
Clusters with M>=20,SeqId<90 and pair Pfam Architecture
Pfam Architecture
Cluster#
#CFs/Cluster
#Entries/Cluster
#CFs/Group
#Entries/Group
Minimum Seq Identity
Surface Area
In PDBBA(%)
In PISABA(%)
CFs Cluster/Group(%)
(C1-set);(MHC_I)_(C1-set)
1
540
1150
563
1258
10
1065
99
91
96
(C1-set);(MHC_I)_(C1-set)
2
86
219
563
1258
14
462
24
24
15
(C1-set);(MHC_I)_(C1-set)
3
51
76
563
1258
12
529
16
12
9
(C1-set);(MHC_I)_(C1-set)
4
29
64
563
1258
83
263
0
0
5
(AAA_16)_(ORC4_C);(AAA_16)_(ORC5_C)
1
24
24
24
24
10
2674
100
8
100
(AAA_16)_(ORC5_C);(ORC2)
1
23
23
23
23
21
883
100
4
100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(LSM)
1
34
34
34
34
34
490
100
18
100
(eIF-6);(Ribosomal_L14)
1
38
38
38
38
60
833
100
37
100
(eIF-6);(Ribosomal_L3)
1
22
22
22
22
61
253
100
32
100
(Peptidase_M24);(Ribosomal_L23eN)_(Ribosomal_L23)
1
20
20
20
20
26
504
100
30
100
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)
1
21
34
23
36
8
342
0
0
91
(Ribosomal_L7Ae);(WD40)_(WD40)
1
21
21
21
21
33
467
100
5
100
(Brix);(Mpp10)
1
25
25
27
27
32
1362
100
4
93
(Brix);(Ribosomal_S9)
1
22
22
22
22
58
312
100
5
100
(EMG1);(Nop14)
1
22
22
22
22
24
1159
100
5
100
(EMG1);(Ribosomal_S7)
1
21
21
21
21
69
384
100
5
100
(Fcf1);(Fibrillarin)
1
24
24
24
24
53
670
100
4
100
(Fcf1);(Ribosomal_S8)
1
23
23
23
23
52
364
100
4
100
(Fcf1);(S4)
1
27
27
27
27
52
847
100
4
100
(Fcf1);(Sas10_Utp3)_(Sas10)
1
24
24
24
24
30
679
100
4
100
(Fcf1);(WD40)_(WD40)_(WD40)_(Sof1)
1
20
20
20
20
49
564
100
5
100
(Fcf2);(Fibrillarin)
1
23
23
23
23
30
1460
100
4
100
(Fibrillarin);(NOP5NT)_(Nop)
1
26
26
26
26
39
1319
100
4
100
(Fibrillarin);(Sas10_Utp3)_(Sas10)
1
23
23
23
23
30
1094
100
4
100
(Fibrillarin);(Utp11)
1
22
22
22
22
29
998
100
5
100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Mpp10)
1
24
24
24
24
32
1827
100
4
100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Ribosom_S12_S23)
1
27
27
27
27
49
1252
100
4
100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(RTC)_(RTC_insert)_(RTC)
1
28
28
28
28
37
2704
100
4
100
(NOP5NT)_(Nop);(Ribosomal_L7Ae)
1
26
26
26
26
39
502
100
4
100
(NOP5NT)_(Nop);(U3_assoc_6)_(TPR_14)
1
23
23
23
23
24
768
100
4
100
(NOP5NT)_(Nop);(Utp14)
1
21
21
21
21
28
592
100
5
100
(NOP5NT)_(Nop);(WD40)_(WD40)_(WD40)_(Sof1)
1
23
23
23
23
49
902
100
4
100
(Nrap)_(Nrap_D2)_(Nrap_D3)_(Nrap_D4)_(Nrap_D5)_(Nrap_D6);(RR M_Rrp7)_(RRP7)
1
23
23
23
23
25
2522
100
4
100
(Ribosomal_S28e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)
1
22
22
22
22
44
607
100
5
100
(Ribosomal_S7);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)
1
20
20
20
20
30
509
100
5
100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)
1
21
21
21
21
55
512
100
5
100
(RTC)_(RTC_insert)_(RTC);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_ (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)
1
21
21
21
21
37
473
100
5
100
(S4);(Sas10_Utp3)_(Sas10)
1
22
22
22
22
30
432
100
5
100
(U3_assoc_6)_(TPR_14);(Utp14)
1
21
21
21
21
24
1182
100
5
100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)
1
20
20
20
20
2
565
100
5
100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)_(WD40)_(Sof1)
1
20
20
20
20
24
383
100
5
100
(U3_snoRNA_assoc);(Utp11)
1
21
21
21
21
23
600
100
5
100
(Utp14);(WD40)_(WD40)_(WD40)_(Sof1)
1
21
21
21
21
28
2311
100
5
100
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)
1
52
52
55
55
82
491
100
2
95
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)
1
91
91
91
91
28
644
99
11
100
(COX1);(COX2_TM)_(COX2)
1
28
102
28
104
15
3554
100
65
100
(COX1);(COX3)
1
28
28
29
96
19
2036
100
39
97
(COX1);(COX7C)
1
21
21
22
88
0
1586
100
29
95
(COX2_TM)_(COX2);(COX6B)
1
20
20
22
88
41
946
100
30
91
(COX3);(COX5B)
1
21
21
22
88
0
938
100
29
95
(COX3);(COX7a)
1
21
21
22
88
0
1285
100
29
95
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)
1
55
97
59
106
0
1643
98
68
93
(Cytochrom_C1);(UCR_14kD)
1
39
75
45
85
23
401
100
75
87
(Cytochrom_C1);(UCR_hinge)
1
42
78
45
85
2
1101
100
72
93
(Cytochrom_C1);(UCR_UQCRX_QCR9)
1
39
74
45
85
5
855
100
74
87
(Cytochrom_C1);(UcrQ)
1
40
77
43
83
5
737
100
73
93
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)
1
40
75
45
85
5
424
100
76
89
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)
1
44
81
45
85
23
1293
98
69
98
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)
1
42
80
43
83
5
1036
98
71
98
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)
1
22
45
23
57
6
1656
100
76
96
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)
2
22
42
23
57
6
940
100
74
96
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)
1
35
57
45
85
21
401
88
68
78
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)
1
29
49
42
82
26
260
96
69
69
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)
1
42
78
43
83
21
844
100
72
98
(UCR_14kD);(UcrQ)
1
39
75
43
83
4
466
97
75
91
(Cytochrom_C1);(UCR_TM)_(Rieske)
1
27
57
34
74
0
788
100
74
79
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)
1
27
61
34
74
49
502
100
72
79
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)
2
25
51
34
74
49
829
84
69
74
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)
1
30
60
34
74
28
874
100
70
88
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)
1
30
61
34
74
31
633
100
69
88
(UCR_TM)_(Rieske);(UcrQ)
1
27
61
34
74
4
586
100
72
79
(CSN8_PSD8_EIF3K);(PCI)_(Rpn3_C)
1
51
51
51
51
10
1939
100
29
100
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)
1
31
31
32
32
66
625
100
19
97
(JAB)_(MitMem_reg);(VWA_2)
1
44
44
44
44
4
609
100
20
100
(PCI)_(Rpn3_C);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEA T_2)_(RPN2_C)
1
31
31
32
32
72
594
100
19
97
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)
1
58
58
58
58
37
1413
100
28
100
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)
1
29
29
29
29
31
321
100
38
100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)
1
30
30
30
30
31
1614
100
37
100
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(ZapB)_(Prot_ATP_ID_OB)_( AAA)_(AAA_lid_3)
1
31
31
31
31
37
2701
100
35
100
(CHCH);(MRP-S35)
1
23
23
24
24
85
386
100
9
96
(CHCH);(Ribosomal_S21)
1
24
24
27
27
85
922
100
8
89
(CHCH);(Ribosomal_S6)
1
24
24
24
24
85
508
100
8
100
(CHCH);(Ribosomal_S7)
1
23
23
27
27
85
870
100
9
85
(DAP3);(MRP-S28)
1
23
23
32
32
84
1100
100
9
72
(DAP3);(Ribosomal_S7)
1
24
24
31
31
85
925
100
8
77
(DAP3);(Ribosomal_S9)
1
30
30
37
37
17
1005
100
7
81
(DUF1713);(Ribosomal_S15)
1
24
24
24
24
5
619
100
8
100
(L51_S25_CI-B8);(MRP-S22)
1
24
24
24
24
68
464
100
8
100
(L51_S25_CI-B8);(MRP-S26)
1
24
24
24
24
75
602
100
8
100
(L51_S25_CI-B8);(Ribosomal_S16)
1
24
24
24
24
87
646
100
8
100
(L51_S25_CI-B8);(Ribosomal_S17)
1
24
24
24
24
86
1308
100
8
100
(L51_S25_CI-B8);(Ribosomal_S5)_(Ribosomal_S5_C)
1
24
24
24
24
82
539
100
8
100
(MRP-S22);(MRP-S34)
1
24
24
24
24
5
268
100
8
100
(MRP-S22);(Ribosomal_S16)
1
24
24
24
24
68
1101
100
8
100
(MRP-S22);(Ribosomal_S18)
1
24
24
24
24
11
1984
100
8
100
(MRP-S22);(Ribosomal_S5)_(Ribosomal_S5_C)
1
24
24
24
24
68
1189
100
8
100
(MRP-S23);(MRP-S35)
1
24
24
24
24
82
911
100
8
100
(MRP-S23);(Ribosomal_S18)
1
24
24
24
24
80
456
100
8
100
(MRP-S23);(Ribosomal_S2)
1
24
24
24
24
75
1794
100
8
100
(MRP-S23);(Ribosomal_S5)_(Ribosomal_S5_C)
1
24
24
24
24
82
583
100
8
100
(MRP-S24);(MRP-S28)
1
23
23
23
23
84
1361
100
9
100
(MRP-S24);(MRP-S31)
1
24
24
24
24
75
285
100
8
100
(MRP-S24);(MRP-S33)
1
24
24
24
24
83
543
100
8
100
(MRP-S24);(Ribosomal_S10)
1
24
24
24
24
13
603
100
8
100
(MRP-S24);(Ribosomal_S14)
1
24
24
24
24
86
981
100
8
100
(MRP-S24);(Ribosomal_S5)_(Ribosomal_S5_C)
1
24
24
24
24
82
514
100
8
100
(MRP-S26);(MRP-S34)
1
24
24
24
24
75
751
100
8
100
(MRP-S26);(Ribosomal_S15)
1
24
24
27
27
5
482
100
8
89
(MRP-S26);(Ribosomal_S16)
1
25
25
28
28
4
789
100
8
89
(MRP-S26);(Ribosomal_S17)
1
22
22
22
22
75
269
100
9
100
(MRP-S26);(Ribosomal_S18)
1
24
24
24
24
75
790
100
8
100
(MRP-S26);(Ribosomal_S18)
2
24
24
24
24
3
607
100
8
100
(MRP-S26);(Ribosomal_S6)
1
24
24
27
27
75
911
100
8
89
(MRP-S27);(MRP-S34)
1
22
22
22
22
4
1359
100
9
100
(MRP-S27);(Ribosomal_S18)
1
22
22
22
22
81
304
100
9
100
(MRP-S28);(MRP-S31)
1
23
23
23
23
0
1166
100
9
100
(MRP-S28);(MRP-S33)
1
30
30
30
30
10
689
97
7
100
(MRP-S28);(Ribosomal_S10)
1
23
23
30
30
13
2134
100
9
77
(MRP-S28);(Ribosomal_S9)
1
23
23
30
30
78
1316
100
9
77
(MRP-S31);(MRP-S33)
1
24
24
24
24
75
681
100
8
100
(MRP-S31);(Ribosomal_S10)
1
24
24
24
24
75
249
100
8
100
(MRP-S31);(Ribosomal_S14)
1
24
24
24
24
75
629
100
8
100
(MRP-S33);(Ribosomal_S14)
1
31
31
31
31
22
1206
97
6
100
(MRP-S33);(Ribosomal_S5)_(Ribosomal_S5_C)
1
24
24
24
24
82
1028
100
8
100
(MRP-S34);(Ribosomal_S16)
1
22
22
27
27
82
235
100
9
81
(MRP-S34);(Ribosomal_S18)
1
24
24
24
24
82
785
100
8
100
(MRP-S35);(Ribosomal_S2)
1
24
24
24
24
7
1109
100
8
100
(MRP-S35);(Ribosomal_S21)
1
23
23
24
24
4
704
100
9
96
(Ribosom_S12_S23);(Ribosomal_S17)
1
336
605
406
730
0
221
100
16
83
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)
1
47
47
88
88
3
269
100
19
53
(Ribosomal_L13);(Ribosomal_L20)
1
444
662
468
690
0
532
100
13
95
(Ribosomal_L13);(Ribosomal_L3)
1
184
250
196
262
3
361
97
8
94
(Ribosomal_L14);(Ribosomal_L19)
1
453
674
479
701
0
798
100
12
95
(Ribosomal_L14);(Ribosomal_L3)
1
192
258
194
260
10
427
97
10
99
(Ribosomal_L16);(Ribosomal_L27)
1
52
164
105
231
7
243
100
3
50
(Ribosomal_L17);(Ribosomal_L3)
1
23
23
36
36
29
634
100
13
64
(Ribosomal_L17);(Ribosomal_L32p)
1
433
650
462
680
0
369
100
12
94
(Ribosomal_L18p);(Ribosomal_L27)
1
24
24
33
34
87
1094
100
12
73
(Ribosomal_L19);(Ribosomal_L3)
1
451
672
478
700
0
722
100
12
94
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)
1
78
78
149
163
40
236
100
17
52
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_S6)
1
24
24
38
45
0
309
96
4
63
(Ribosomal_L20);(Ribosomal_L21p)
1
449
671
472
695
0
976
100
12
95
(Ribosomal_L22);(Ribosomal_L32p)
1
454
676
477
700
0
466
100
13
95
(Ribosomal_L27A);(Ribosomal_L35p)
1
430
644
462
684
0
801
100
11
93
(Ribosomal_L27A);(Ribosomal_L4)
1
458
658
490
711
0
486
100
13
93
(Synaptobrevin);(Syntaxin)_(SNARE)
1
26
29
26
30
0
1402
100
72
100
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)
1
265
447
336
525
0
233
100
10
79
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)
2
25
25
336
525
8
1401
100
12
7
(Ribosomal_S10);(Ribosomal_S14)
1
610
914
629
961
0
788
99
13
97
(Ribosomal_S10);(Ribosomal_S9)
1
36
36
61
68
13
399
100
6
59
(Ribosomal_S11);(Ribosomal_S18)
1
96
285
156
460
3
315
100
6
62
(Ribosomal_S11);(Ribosomal_S18)
2
26
107
156
460
27
311
100
2
17
(Ribosomal_S11);(Ribosomal_S21)
1
288
313
319
347
0
1069
100
13
90
(Ribosomal_S11);(Ribosomal_S7)
1
297
559
393
709
0
243
100
15
76
(Ribosomal_S15);(Ribosomal_S17)
1
25
25
34
34
2
358
100
8
74
(Ribosomal_S15);(Ribosomal_S6)
1
27
27
37
37
2
376
100
7
73
(Ribosomal_S16);(Ribosomal_S18)
1
25
25
25
25
84
585
100
8
100
(Ribosomal_S18);(Ribosomal_S21)
1
144
168
201
228
0
291
99
13
72
(Ribosomal_S18);(Ribosomal_S5)_(Ribosomal_S5_C)
1
25
25
25
25
7
582
100
8
100
(Ribosomal_S18);(Ribosomal_S6)
1
430
726
449
775
0
898
100
10
96
(Ribosomal_S2);(Ribosomal_S21)
1
20
20
21
21
75
245
100
10
95
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)
1
72
78
83
89
6
510
91
13
87
(Ribosomal_S2);(Ribosomal_S9)
1
34
34
34
34
24
1165
97
6
100
(Ribosomal_S21);(Ribosomal_S6)
1
21
21
27
27
19
223
100
10
78
(Ribosomal_S21);(Ribosomal_S9)
1
20
20
21
21
78
237
100
10
95
(ATP-synt_8);(ATP-synt_A)
1
25
25
25
25
4
927
100
24
100
(ATP-synt_A);(WRW)
1
20
20
25
25
32
691
100
25
80
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(IATP)
1
23
23
23
23
16
684
100
17
100
(ATP-synt_E);(ATP-synt_G)
1
20
20
20
20
88
646
100
30
100
(Ribosomal_S7);(Ribosomal_S9)
1
542
813
624
932
0
427
99
11
87
(Ribosomal_S7);(Ribosomal_S9)
2
28
28
624
932
78
1420
100
7
4
(Mt_ATP-synt_B);(WRW)
1
20
20
25
25
1
557
100
30
80
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)
1
56
67
61
72
5
1263
100
42
92
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)
1
22
23
30
31
5
248
96
4
73
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)
2
21
22
30
31
17
250
95
5
70
(Ribosomal_L13);(Ribosomal_L14e)
1
26
26
26
26
4
926
100
12
100
(eIF-1a);(Ribosom_S12_S23)
1
33
33
33
33
8
388
97
18
100
(7tm_1);(G-alpha)
1
81
81
180
180
2
1197
100
2
45
(7tm_1);(G-alpha)
2
25
25
180
180
21
1127
100
0
14
(G-alpha);(V-set)_(V-set)
1
87
87
148
148
43
532
100
0
59
(G-alpha);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
160
161
227
228
4
1261
100
4
70
(G-gamma);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
169
178
236
246
0
2083
100
11
72
(G-alpha);(V-set)
1
104
104
113
113
1
828
99
1
92
(G-alpha);(ZapB)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
54
54
61
61
24
1360
98
4
89
(GP120);(ig)_(C2-set)
1
30
39
30
43
21
1030
100
33
100
(Ribosomal_L16);(Ribosomal_L25p)
1
288
316
308
336
21
386
100
13
94
(Ribosomal_L23);(Ribosomal_L29)
1
432
708
455
737
0
492
100
11
95
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)
1
221
390
260
438
0
978
100
11
85
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)
1
22
45
29
68
11
1324
100
73
76
(RNA_pol_I_A49);(RNA_polI_A34)
1
31
35
31
35
38
2028
100
83
100
(MMS1_N)_(CPSF_A);(SF3b10)
1
25
29
25
29
22
1701
100
34
100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM_N)_(MCM_OB)_(MCM)_(MCM _lid)_(MCM6_C)
1
25
25
27
27
44
3510
100
32
93
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM2_N)_(MCM_N)_(MCM_OB)_( MCM)_(MCM_lid)
1
25
25
28
28
30
3044
100
52
89
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)_(MCM6_C);(MCM2_N)_(MCM_N)_( MCM_OB)_(MCM)_(MCM_lid)
1
30
30
32
32
33
2870
100
43
94
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)
1
149
186
163
203
33
999
100
37
91
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)
1
68
68
71
71
42
1708
100
16
96
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)
2
66
66
71
71
42
305
100
17
93
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
77
94
79
96
42
8097
100
12
97
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
4
801
41
5
100
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
74
571
41
5
100
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
74
533
41
5
100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
10
418
41
5
100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
74
252
41
5
100
(Ribosomal_L14);(Ribosomal_L24e)
1
184
251
184
251
0
529
97
10
100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)
1
558
862
587
919
0
409
99
11
95
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)
1
566
894
586
918
0
780
99
13
97
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)
1
183
189
187
193
2
493
96
8
98
(KH_2)_(Ribosomal_S3_C);(S10_plectin)
1
177
183
177
183
0
879
96
7
100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)
1
159
165
161
167
3
491
96
7
99
(Ribosomal_L7Ae);(S10_plectin)
1
21
21
26
26
20
288
90
5
81
(Ribosomal_S13);(Ribosomal_S19)
1
588
911
610
942
0
426
99
10
96
(Ribosomal_S13);(Ribosomal_S19e)
1
189
195
193
199
4
443
96
11
98
(Ribosomal_S13);(Ribosomal_S25)
1
175
181
177
183
0
461
96
9
99
(Ribosomal_S14);(Ribosomal_S19)
1
255
283
300
329
6
335
100
13
85
(Ribosomal_S14);(S10_plectin)
1
165
171
168
174
0
297
95
7
98
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)
1
167
173
167
173
10
524
96
9
100
(Ribosomal_S19e);(Ribosomal_S9)
1
128
128
136
136
2
282
98
12
94
(Ribosomal_S25);(Ribosomal_S7)
1
184
190
184
190
2
594
96
9
100
(Ribosomal_S28e);(Ribosomal_S7)
1
225
231
225
231
0
1099
97
10
100
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)
1
600
899
618
950
0
579
99
12
97
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)
1
160
166
161
167
10
299
96
8
99
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)
1
96
96
100
100
5
592
99
7
96
(Ribosomal_S2);(Ribosomal_S8)
1
84
356
90
387
82
258
100
5
93
(Fibrillarin);(Ribosomal_L7Ae)
1
22
22
27
30
61
456
100
5
81
(Ribosomal_L31);(Ribosomal_S13)
1
151
309
197
367
0
399
100
12
77
(Ribosomal_L31);(Ribosomal_S19)
1
156
291
200
357
5
436
100
12
78
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)
1
215
355
384
566
24
273
100
10
56
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)
2
60
60
384
566
58
282
98
0
16
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)
3
46
72
384
566
4
307
100
1
12
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)
1
328
624
401
727
0
321
100
15
82
(Ribosomal_S4)_(S4);(Ribosomal_S6)
1
26
61
60
146
28
386
11
0
43
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab)_(T3SS_ATPase_C)
1
164
172
164
173
18
2074
100
52
100
(DNA_RNApol_7kD);(RNA_pol_A_bac)
1
117
237
121
249
0
584
100
58
97
(DNA_RNApol_7kD);(RNA_pol_N)
1
25
29
65
118
30
202
100
66
38
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
81
205
84
208
21
1008
100
53
96
(RNA_pol_A_bac);(RNA_pol_L_2)
1
116
238
121
249
4
2037
100
65
96
(RNA_pol_A_bac);(RNA_pol_N)
1
117
237
121
249
20
1111
100
70
97
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
47
135
57
179
49
363
100
50
82
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
69
185
72
196
42
1684
99
70
96
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
69
193
72
196
35
963
99
46
96
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
77
199
82
206
21
451
99
63
94
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
69
193
72
196
45
1534
99
69
96
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
79
203
82
206
25
1327
100
52
96
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
80
204
84
208
38
1528
100
70
95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
70
194
73
197
52
9001
99
55
96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)
1
70
194
73
197
5
2122
99
69
96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
69
191
73
197
4
1905
99
68
95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)
1
69
193
73
197
35
1525
99
68
95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)
1
62
115
66
119
5
591
99
48
94
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)
1
21
67
41
92
51
289
99
45
51
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)
1
73
125
77
131
1
2003
99
47
95
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)
1
69
120
73
127
4
434
98
44
95
(Histone);(Histone)_(Histone_H2A_C)
1
278
428
285
489
6
2420
99
54
98
(Histone);(Histone)_(Histone_H2A_C)
2
253
365
285
489
23
661
99
51
89
(Histone);(TAF)
1
286
413
298
509
12
2436
100
54
96
(Histone);(TAF)
2
261
379
298
509
2
415
100
51
88
(Histone)_(Histone_H2A_C);(TAF)
1
257
381
265
468
11
412
99
51
97
(NusG)_(KOW);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1 _3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)
1
34
34
34
34
4
662
100
6
100
(Adaptin_N);(Clat_adaptor_s)
1
31
34
34
37
6
2534
100
53
91
(Adaptin_N);(Clat_adaptor_s)_(Adap_comp_sub)
1
23
26
27
30
40
3070
100
50
85
(Alpha_E1_glycop);(Alpha_E2_glycop)
1
20
22
24
26
33
1154
100
18
83
(Alpha_E1_glycop);(Alpha_E2_glycop)_(Alpha_E1_glycop)
1
27
27
27
27
15
2658
100
0
100
(Alpha_E1_glycop);(Alpha_E2_glycop)_(Alpha_E1_glycop)
2
23
23
27
27
15
542
100
0
85
(Aminotran_1_2);(SPT_ssu-like)
1
21
21
21
21
35
890
100
0
100
(ubiquitin);(UQ_con)
1
32
33
71
83
23
807
100
55
45
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(CaM_bdg_C0);(AN F_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(NMDAR2_C)
1
25
25
26
26
57
2106
100
0
96
(Kinesin);(Tubulin)_(Tubulin_C)
1
46
46
88
88
23
671
100
17
52
(Kinesin);(Tubulin)_(Tubulin_C)
2
33
33
88
88
23
780
97
33
38
(Skp1_POZ);(ubiquitin)
1
43
103
43
107
2
943
99
76
100
(Thrombin_light);(Trypsin)
1
96
364
96
447
9
1153
100
99
100
(ubiquitin);(UCH)
1
25
32
28
41
4
1692
100
97
89
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)
1
29
29
29
29
38
2645
100
24
100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)
1
21
21
23
23
36
370
100
19
91
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)
1
48
48
52
52
26
395
100
29
92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)
2
48
48
52
52
31
392
100
27
92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)
3
43
43
52
52
60
483
100
30
83
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)
1
73
73
131
131
13
749
100
51
56
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)
2
71
71
131
131
13
1199
100
63
54
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)
3
66
66
131
131
12
599
100
9
50
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)
1
33
33
57
58
31
316
100
27
58
(DSS1_SEM1);(PCI)_(Rpn3_C)
1
24
24
41
41
34
965
100
0
59
(DSS1_SEM1);(RPN7)_(PCI)
1
32
32
57
57
0
952
100
3
56
(DSS1_SEM1);(RPN7)_(PCI)
2
25
25
57
57
37
851
100
56
44
(JAB)_(MitMem_reg);(PCI)_(Rpn3_C)
1
39
39
52
52
31
789
100
18
75
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
1
27
27
58
58
43
590
100
37
47
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
2
23
23
58
58
43
510
100
26
40
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
3
22
22
58
58
43
507
100
0
38
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
4
20
20
58
58
43
485
100
0
34
(JAB)_(MitMem_reg);(RPN7)_(PCI)
1
48
49
62
63
4
426
100
18
77
(PCI)_(Rpn3_C);(RPN7)_(PCI)
1
51
51
51
51
27
1261
100
29
100
(ATP-synt_A);(Mt_ATP-synt_B)
1
32
32
39
39
6
713
100
19
82
(ATP-synt_A);(Mt_ATP-synt_D)
1
22
22
32
32
85
360
100
27
69
(Ribosomal_L14e);(Ribosomal_L18A)
1
25
25
27
27
14
1066
100
8
93
(Ribosomal_L24e);(Ribosomal_S6e)
1
82
95
93
106
1
801
76
2
88
(eIF-5_eIF-2B);(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C)
1
22
23
23
24
8
835
100
43
96
(MHC_I)_(C1-set);(V-set)_(C1-set)
1
100
200
133
253
24
451
98
50
75
(MHC_I)_(C1-set);(V-set)_(DUF1968)
1
111
227
119
238
36
482
95
52
93
(V-set)_(C1-set);(V-set)_(DUF1968)
1
270
504
271
517
7
1922
100
91
100
(V-set);(V-set)_(C1-set)
1
25
30
65
87
10
530
80
27
38
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
245
315
255
325
9
1536
100
48
96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)
1
52
74
55
78
47
2751
100
43
95
(Oxidored_q2);(Proton_antipo_M)
1
22
27
22
27
5
1531
100
44
100
(Oxidored_q3);(Proton_antipo_M)
1
20
25
20
25
0
1098
100
48
100
(Mt_ATP-synt_B);(Mt_ATP-synt_D)
1
47
47
48
48
3
1505
100
32
98
(ATP-synt_F6);(Mt_ATP-synt_B)
1
21
21
29
29
4
1274
100
33
72
(Cation_ATPase_N)_(E1-E2_ATPase)_(Cation_ATPase)_(Cation_ATP ase_C);(Na_K-ATPase)
1
33
72
33
79
30
2034
100
67
100
(CR6_interact);(MRP-L51)
1
30
33
30
39
76
423
100
12
100
(CR6_interact);(Ribosomal_L27A)
1
29
32
29
38
76
1065
100
12
100
(CR6_interact);(Ribosomal_L28)
1
29
32
29
38
76
384
100
12
100
(CR6_interact);(Ribosomal_L33)
1
29
32
29
38
76
481
100
12
100
(CR6_interact);(Ribosomal_L4)
1
29
32
29
38
76
459
100
12
100
(Img2);(MRP-63)
1
30
33
30
39
72
594
100
12
100
(Img2);(Ribosomal_L27A)
1
29
32
34
43
87
1377
100
12
85
(Img2);(Ribosomal_L4)
1
39
42
44
53
4
824
98
12
89
(KOW)_(ribosomal_L24);(MRP-L27)
1
30
33
30
39
22
1353
100
12
100
(KOW)_(ribosomal_L24);(MRP-L47)
1
36
39
36
45
7
1700
100
13
100
(KOW)_(ribosomal_L24);(Ribosomal_L23)
1
31
34
36
45
81
786
100
15
86
(L51_S25_CI-B8);(MRP-63)
1
30
33
30
39
72
370
100
12
100
(L51_S25_CI-B8);(MRP-S32)
1
30
33
30
39
8
669
100
15
100
(L51_S25_CI-B8);(Ribonucleas_3_3)_(dsrm)
1
30
33
34
43
88
1492
100
15
88
(L51_S25_CI-B8);(Ribosomal_L13)
1
39
42
43
52
18
783
98
12
91
(L51_S25_CI-B8);(Ribosomal_L20)
1
31
34
31
40
22
595
100
12
100
(L51_S25_CI-B8);(Ribosomal_L21p)
1
41
44
45
54
0
1286
98
11
91
(L51_S25_CI-B8);(Ribosomal_L50)
1
30
33
39
48
80
687
100
15
77
(Mitoc_L55);(MRP-L28)
1
28
31
28
37
70
830
100
13
100
(Mitoc_L55);(MRP-L46)
1
28
31
28
37
70
1214
100
13
100
(Mitoc_L55);(Ribosomal_S10)
1
28
31
28
37
70
923
100
13
100
(MRP_L53);(Ribosomal_L10)
1
29
32
29
38
85
844
100
12
100
(MRP_L53);(Ribosomal_S18)
1
30
33
30
39
85
509
100
12
100
(MRP-63);(MRPL52)
1
30
33
30
39
72
385
100
12
100
(MRP-63);(Ribosomal_L10)
1
29
32
29
38
72
497
100
12
100
(MRP-63);(Ribosomal_L16)
1
29
32
29
38
72
323
100
12
100
(MRP-63);(Ribosomal_L27A)
1
29
32
29
38
72
521
100
12
100
(MRP-63);(Ribosomal_L30)
1
29
32
29
38
72
1222
100
12
100
(MRP-63);(Ribosomal_S18)
1
24
24
24
30
72
250
100
4
100
(MRP-L27);(MRP-L47)
1
36
39
40
49
22
1651
100
13
90
(MRP-L27);(Ribosomal_L23)
1
38
41
38
47
5
1457
98
12
100
(MRP-L27);(Ribosomal_L28)
1
29
32
29
38
77
503
100
12
100
(MRP-L27);(Ribosomal_L34)
1
38
41
38
47
22
438
98
12
100
(MRP-L28);(MRP-L46)
1
35
38
35
44
11
2236
100
16
100
(MRP-L28);(Ribosomal_S10)
1
30
33
30
39
72
1740
100
15
100
(MRP-L46);(Ribosomal_S10)
1
30
33
30
39
76
361
100
15
100
(MRP-L47);(MRP-L51)
1
29
32
29
38
82
234
100
12
100
(MRP-L47);(PDCD9)
1
29
32
29
38
83
561
100
12
100
(MRP-L47);(Ribosomal_L23)
1
45
48
45
54
2
1785
98
12
100
(MRP-L47);(Ribosomal_L28)
1
30
33
30
39
83
451
100
15
100
(MRP-L47);(Ribosomal_L34)
1
30
33
30
39
83
518
100
15
100
(MRP-L51);(Ribonucleas_3_3)_(dsrm)
1
30
33
30
39
82
368
100
12
100
(MRP-L51);(Ribosomal_L27A)
1
29
32
29
38
82
290
100
12
100
(MRP-L51);(Ribosomal_L28)
1
29
32
29
38
82
326
100
12
100
(MRP-L51);(Ribosomal_L35p)
1
29
32
29
38
80
399
100
12
100
(MRP-L51);(Ribosomal_L4)
1
29
32
29
38
82
1829
100
12
100
(MRPL52);(Ribosomal_L20)
1
29
32
29
38
81
394
100
12
100
(MRPL52);(Ribosomal_L21p)
1
31
34
31
40
7
668
100
12
100
(MRPL52);(Ribosomal_L30)
1
29
32
31
40
81
1056
100
12
94
(MRP-S32);(Ribonucleas_3_3)_(dsrm)
1
29
32
29
38
69
680
100
16
100
(MRP-S32);(Ribosomal_L13)
1
29
32
29
38
30
294
100
12
100
(MRP-S32);(Ribosomal_L20)
1
28
31
28
37
69
866
100
13
100
(MRP-S32);(Ribosomal_L21p)
1
28
31
28
37
69
809
100
13
100
(MRP-S32);(Ribosomal_L22)
1
29
32
29
38
69
413
100
12
100
(PBP);(RF-1)
1
31
34
31
40
77
958
100
12
100
(PBP);(Ribosomal_L18p)
1
30
33
30
39
88
2744
100
12
100
(PBP);(Ribosomal_L27)
1
29
32
36
45
87
1811
100
12
81
(PBP);(Ribosomal_L27A)
1
29
32
34
43
88
255
100
12
85
(PBP);(Ribosomal_L35p)
1
29
32
29
38
80
1116
100
12
100
(PBP);(Ribosomal_S10)
1
30
33
30
39
76
644
100
12
100
(PDCD9);(Ribosomal_L17)
1
27
30
27
36
82
368
100
13
100
(PDCD9);(Ribosomal_L2)_(Ribosomal_L2_C)
1
29
32
29
38
85
777
100
12
100
(PDCD9);(Ribosomal_L23)
1
29
32
29
38
81
532
100
12
100
(PDCD9);(Ribosomal_L28)
1
29
32
29
38
83
825
100
12
100
(RF-1);(Ribosomal_L18p)
1
28
31
28
37
77
446
100
13
100
(RF-1);(Ribosomal_L27A)
1
30
33
30
39
77
1553
100
12
100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L13)
1
33
36
33
42
14
807
97
11
100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L20)
1
29
32
29
38
87
374
100
12
100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L21p)
1
29
32
29
38
77
319
100
12
100
(Ribosomal_L10);(Ribosomal_L16)
1
32
35
32
41
85
1231
100
14
100
(Ribosomal_L10);(Ribosomal_S18)
1
29
32
30
39
85
236
100
9
97
(Ribosomal_L13);(Ribosomal_L22)
1
43
46
48
57
21
523
98
13
90
(Ribosomal_L13);(Ribosomal_S18)
1
30
33
30
39
85
2360
100
12
100
(Ribosomal_L16);(Ribosomal_L30)
1
31
34
31
40
81
427
100
15
100
(Ribosomal_L16);(Ribosomal_L37)
1
27
29
28
37
20
393
100
10
96
(Ribosomal_L17);(Ribosomal_L19)
1
29
32
29
38
80
637
100
16
100
(Ribosomal_L17);(TGS)_(tRNA_SAD)
1
27
30
27
36
89
746
100
13
100
(Ribosomal_L20);(Ribosomal_L22)
1
31
34
31
40
86
273
100
15
100
(Ribosomal_L21p);(Ribosomal_S18)
1
30
33
30
39
77
526
100
12
100
(Ribosomal_L22);(TGS)_(tRNA_SAD)
1
30
33
30
39
78
357
100
12
100
(Ribosomal_L27);(Ribosomal_S10)
1
30
33
30
39
76
395
100
12
100
(Ribosomal_L3);(TGS)_(tRNA_SAD)
1
30
33
30
39
82
575
100
12
100
(Ribosomal_L32p);(TGS)_(tRNA_SAD)
1
29
32
29
38
85
256
100
12
100
(Ribosomal_L4);(Ribosomal_L50)
1
29
32
38
47
80
1054
100
12
76
(Fer4_7);(PsaA_PsaB)
1
34
39
35
40
0
802
100
38
97
(Fer4_7);(PsaA_PsaB)
2
34
39
35
40
3
407
100
36
97
(bCoV_S1_N)_(bCoV_S1_RBD);(Peptidase_M2)
1
28
36
29
37
8
779
100
33
97
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)
1
64
89
131
185
5
509
47
22
49
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)
2
32
39
131
185
8
694
100
36
24
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)
3
30
37
131
185
8
455
100
46
23
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)
4
24
29
131
185
3
352
93
28
18
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)
1
50
50
62
62
24
1409
100
16
81
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(Peptidase_M2)
1
20
29
24
33
9
867
100
41
83
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)
1
42
42
215
215
12
593
100
5
20
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)
2
31
31
215
215
12
546
100
10
14
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)
3
28
28
215
215
12
688
100
21
13
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)
4
27
27
215
215
13
519
100
4
13
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)
5
24
24
215
215
12
554
100
8
11
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)
6
24
24
215
215
12
402
100
0
11
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(Peptidase_M2)
1
62
62
85
85
11
1082
100
2
73
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)
1
64
64
209
209
11
478
100
6
31
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)
2
34
34
209
209
12
431
100
9
16
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)
3
28
28
209
209
12
388
100
0
13
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)
4
25
25
209
209
12
608
100
4
12
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)
5
23
23
209
209
12
503
100
4
11
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)
6
22
22
209
209
12
416
100
18
11
(Skp1_POZ);(VHL)_(VHL_C)
1
22
74
22
80
4
1004
100
77
100
(LRR_9);(RRM_1)
1
23
23
23
23
24
549
100
13
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)
1
101
114
101
114
2
491
82
15
100
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
93
106
95
108
35
243
80
14
98
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)
1
30
30
33
33
47
219
90
17
91
(Ribosomal_L32e);(Ribosomal_L6e)
1
95
108
95
108
2
511
81
15
100
(Ribosomal_L35Ae);(Ribosomal_L6e)
1
108
121
108
121
2
859
83
15
100
(Ribosomal_S17e);(Ribosomal_S2)
1
74
87
74
87
2
955
75
8
100
(Ribosomal_S2);(Ribosomal_S21e)
1
75
88
75
88
0
1506
75
9
100
(GP120);(GP41)
1
122
136
122
140
0
2033
99
28
100
(GP120);(V-set)_(C1-set)
1
52
72
226
288
16
267
100
57
23
(GP120);(V-set)_(C1-set)
2
37
48
226
288
12
893
100
46
16
(GP120);(V-set)_(C1-set)
3
24
34
226
288
19
316
94
15
11
(GP120);(V-set)_(C1-set)
4
24
34
226
288
58
296
94
18
11
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)
1
23
26
23
26
33
2087
100
19
100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)
1
23
26
23
26
33
1743
100
15
100
(F_actin_cap_B);(F-actin_cap_A)
1
24
28
24
28
10
3543
100
75
100
(Pico_P1A);(Rhv)
1
151
236
158
252
0
923
100
38
96
(Pico_P1A);(Rhv)
2
132
204
158
252
0
565
100
34
84
(C1-set);(MHC_I_3)_(C1-set)
1
47
151
47
156
11
1232
100
96
100
(G-alpha);(HRM)_(7tm_2)
1
67
67
67
67
2
1039
100
0
100
(HRM)_(7tm_2);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
24
24
31
31
25
259
100
0
77
(Calici_coat);(CRPV_capsid)
1
24
24
25
25
7
3446
100
33
96
(Calici_coat);(Rhv)
1
23
24
23
24
10
1159
100
33
100
(CRPV_capsid);(Rhv)
1
21
21
25
25
6
1297
100
29
84
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)
1
20
54
20
54
35
2595
100
46
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
62
120
70
128
30
1832
100
72
89
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
2
56
113
70
128
30
287
100
75
80
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (RNA_pol_Rpb6)
1
40
79
61
121
10
214
100
61
66
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)
1
159
210
159
212
8
2052
100
97
100
(Cyclin_N)_(Cyclin_C);(Pkinase)
1
35
127
39
172
3
1364
99
91
90
(Cyclin_N)_(Cyclin_C);(Pkinase)
2
22
94
39
172
3
620
34
36
56
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom _S12_S23)
1
30
34
37
41
4
331
100
0
81
(PsaA_PsaB);(PsaD)
1
57
63
58
69
5
797
100
29
98
(PsaA_PsaB);(PsaD)
2
57
64
58
69
5
701
100
31
98
(PsaA_PsaB);(PsaL)
1
53
60
54
65
21
540
100
28
98
(PsaA_PsaB);(PsaL)
2
44
50
54
65
21
358
100
30
81
(PsaA_PsaB);(PsaM)
1
35
40
36
41
34
961
100
32
97
(PsaA_PsaB);(PSI_8)
1
53
63
54
65
0
743
100
32
98
(PsaA_PsaB);(PSI_PsaE)
1
53
60
57
68
0
394
100
25
93
(PsaA_PsaB);(PSI_PsaE)
2
52
60
57
68
40
280
100
23
91
(PsaA_PsaB);(PSI_PsaF)
1
52
57
54
65
21
946
100
26
96
(PsaA_PsaB);(PSI_PsaF)
2
52
58
54
65
21
1061
100
29
96
(PsaA_PsaB);(PSI_PsaJ)
1
50
57
51
59
21
353
100
32
98
(PsaD);(PsaL)
1
41
48
45
56
5
468
100
33
91
(PsaL);(PSI_8)
1
39
44
44
52
0
259
100
32
89
(PsaM);(PSI_8)
1
27
32
30
35
0
226
100
41
90
(PSI_PsaE);(PSI_PsaF)
1
44
47
46
51
0
259
100
26
96
(PSI_PsaF);(PSI_PsaJ)
1
52
58
54
65
9
703
100
28
96
(Fer4_7);(PsaD)
1
34
39
35
40
2
1418
100
38
97
(Fer4_7);(PSI_PsaE)
1
34
39
35
40
40
536
100
26
97
(PsaA_PsaB);(PSI_PSAK)
1
47
55
50
61
3
630
100
22
94
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)
1
30
70
30
86
7
742
100
37
100
(Cytochrom_B559);(Photo_RC)
1
29
38
30
86
0
451
100
39
97
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)
1
28
38
29
85
62
1294
100
37
97
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)
2
27
41
29
85
62
303
100
44
93
(Photo_RC);(PSII)
1
30
83
30
86
17
1807
100
45
100
(Photo_RC);(PSII)
2
30
75
30
86
6
1851
100
39
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_ Rpb2_6)_(RNA_pol_Rpb2_7)
1
48
75
56
83
30
8026
100
53
86
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_ (RNA_pol_Rpb2_7);(RNA_pol_Rpb6)
1
59
76
67
84
26
234
100
8
88
(ATP-synt_A);(ATP-synt_B)
1
38
38
41
49
4
1483
100
3
93
(CoV_NSP7);(CoV_NSP8)
1
51
54
60
64
4
1303
100
22
85
(CoV_NSP7);(CoV_RPol_N)_(RdRP_1)
1
53
53
53
53
11
805
100
15
100
(CoV_NSP8);(CoV_RPol_N)_(RdRP_1)
1
54
54
54
54
13
2432
100
15
100
(CoV_NSP8);(CoV_RPol_N)_(RdRP_1)
2
26
26
54
54
13
825
100
4
48
(HRM)_(7tm_2);(ZapB)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)
1
21
21
35
35
27
294
100
0
60
(Rhv);(VP4_2)
1
20
29
24
34
16
466
97
62
83
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)
1
97
289
98
293
5
1120
100
8
99
(Cullin)_(Cullin_Nedd8);(zf-rbx1)
1
20
20
20
20
20
1960
100
80
100
(LHC);(Photo_RC)
1
21
24
25
28
22
452
100
33
84
(LHC);(Photo_RC)
2
21
24
25
28
22
579
100
33
84
(LHC);(Photo_RC)
3
21
24
25
28
5
312
100
33
84
(Photo_RC);(PRCH)_(PRC)
1
34
166
38
182
35
1618
100
88
89
(Photo_RC);(PRCH)_(PRC)
2
34
166
38
182
35
2701
100
89
89
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)
1
42
59
52
74
51
303
95
25
81
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)
1
31
41
42
57
51
307
93
34
74
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)
1
44
49
50
64
10
354
96
29
88
(TFIIA);(TFIIA_gamma_N)_(TFIIA_gamma_C)
1
23
26
23
26
16
2264
100
27
100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)
1
72
77
73
78
22
920
100
70
99
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)
1
62
66
63
67
28
1626
100
68
98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)
1
29
29
30
30
33
663
100
48
97
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_Rpb5_C)
1
65
69
66
70
28
2391
100
62
98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)
1
65
69
66
70
28
1703
100
62
98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)
1
30
30
31
31
44
1270
100
50
97
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)
1
32
32
33
33
30
1771
100
53
97
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)
1
30
30
31
31
44
427
100
50
97
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7)
1
25
26
26
27
23
946
100
58
96
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_(RNA_p ol_Rpb2_7)
1
25
26
26
27
37
1592
100
58
96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_R pb2_6)_(RNA_pol_Rpb2_7)
1
25
26
26
27
36
8788
100
58
96
(Plug_translocon)_(SecY);(Sec61_beta)
1
45
47
45
47
0
990
96
26
100
(Plug_translocon)_(SecY);(SecE)
1
51
53
52
54
3
1666
96
26
98
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)
1
50
50
51
51
8
1115
100
2
98
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)
2
33
33
51
51
2
892
100
0
65
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_L_2)
1
20
21
20
21
23
1819
100
48
100
(Flu_PA);(Flu_PB1)
1
52
64
52
65
3
6438
100
69
100
(Flu_PA);(Flu_PB2)
1
28
38
50
63
21
1918
100
66
56
(Flu_PB1);(Flu_PB2)
1
50
64
50
64
8
5765
100
69
100
(Kunitz_BPTI);(Trypsin)
1
36
97
39
102
0
539
100
97
92
(Hormone_2);(HRM)_(7tm_2)
1
34
34
35
35
4
1595
100
3
97
(Filo_glycop);(TLV_coat)
1
31
50
31
51
12
2470
98
70
100
(Filo_glycop);(TLV_coat)
2
31
50
31
51
12
410
88
68
100
(Filo_glycop);(TLV_coat)
3
31
50
31
51
13
447
88
68
100
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)
1
75
88
75
94
4
2619
100
38
100
(CI-B14_5a);(Complex1_30kDa)
1
48
48
48
48
84
1286
100
10
100
(CI-B14_5a);(Complex1_49kDa)
1
48
48
48
48
84
1491
100
10
100
(CI-B14_5a);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)
1
42
42
47
47
84
224
100
10
89
(CI-B14_5a);(ETC_C1_NDUFA5)
1
45
45
47
47
83
380
100
9
96
(CI-B14_5a);(Fer4_7)
1
48
48
48
48
84
1004
100
10
100
(CI-B14_5a);(GRIM-19)
1
44
44
47
47
9
479
100
9
94
(CI-B14_5a);(NDUFA12)
1
45
45
47
47
84
501
100
11
96
(Complex1_30kDa);(Complex1_49kDa)
1
86
94
86
94
3
2427
100
29
100
(Complex1_30kDa);(Complex1_LYR)
1
63
63
63
63
17
1042
100
19
100
(Complex1_30kDa);(ETC_C1_NDUFA4)
1
60
60
60
60
29
1336
100
13
100
(Complex1_30kDa);(ETC_C1_NDUFA5)
1
64
64
64
64
2
1429
100
19
100
(Complex1_30kDa);(Fer4_7)
1
61
61
73
81
19
269
100
20
84
(Complex1_30kDa);(Oxidored_q6)
1
81
89
83
91
18
679
100
30
98
(Complex1_49kDa);(dNK)
1
44
44
47
47
78
462
100
7
94
(Complex1_49kDa);(ESSS)
1
27
27
39
39
79
227
100
11
69
(Complex1_49kDa);(ETC_C1_NDUFA5)
1
60
60
63
63
31
428
100
20
95
(Complex1_49kDa);(Fer4_7)
1
85
93
85
93
4
1754
100
29
100
(Complex1_49kDa);(GRIM-19)
1
63
63
63
63
5
934
100
19
100
(Complex1_49kDa);(NADHdh)
1
77
82
80
85
3
1103
100
23
96
(Complex1_49kDa);(Oxidored_q2)
1
29
29
46
46
66
258
100
7
63
(Complex1_49kDa);(Oxidored_q4)
1
58
63
70
75
10
471
100
29
83
(Complex1_49kDa);(Oxidored_q5_N)_(Proton_antipo_M)
1
44
44
48
48
67
312
100
9
92
(Complex1_49kDa);(Oxidored_q6)
1
86
94
86
94
1
1462
100
29
100
(Complex1_49kDa);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
50
50
51
51
54
851
100
14
98
(Complex1_49kDa);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_ C)
1
32
32
52
52
64
379
100
12
62
(Complex1_49kDa);(zf-CHCC)
1
41
41
47
47
25
221
100
12
87
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(ETC_C1_NDUFA4)
1
56
56
59
59
29
507
100
14
95
(Complex1_LYR);(ETC_C1_NDUFA4)
1
58
58
58
58
17
665
100
14
100
(Complex1_LYR);(NDUF_B12)
1
53
53
57
57
22
460
100
13
93
(Complex1_LYR);(NDUF_B4)
1
54
54
58
58
61
1315
100
17
93
(Complex1_LYR);(NDUF_B5)
1
49
49
52
52
24
535
100
14
94
(Complex1_LYR);(NDUF_B6)
1
52
52
52
52
25
1020
100
13
100
(Complex1_LYR);(NDUF_B8)
1
50
50
53
53
21
406
100
10
94
(Complex1_LYR);(Oxidored_q5_N)_(Proton_antipo_M)
1
58
58
62
62
22
412
100
17
94
(Complex1_LYR);(PP-binding)
1
76
84
79
87
3
746
100
25
96
(Complex1_LYR);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
62
62
62
62
22
1387
100
18
100
(dNK);(ESSS)
1
45
45
49
49
58
413
100
13
92
(dNK);(NDUF_C2)
1
52
52
52
52
42
383
100
13
100
(dNK);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
53
53
53
53
54
1590
100
13
100
(ESSS);(NDUF_B5)
1
51
51
52
52
24
894
100
14
98
(ESSS);(NDUFB10)
1
52
52
52
52
31
1527
100
13
100
(ESSS);(Oxidored_q5_N)_(Proton_antipo_M)
1
52
52
52
52
5
1594
100
13
100
(ETC_C1_NDUFA4);(Fer4_7)
1
55
55
58
58
30
249
100
13
95
(Fer4_7);(GRIM-19)
1
58
58
62
62
22
359
100
19
94
(Fer4_7);(NADHdh)
1
77
82
78
83
16
715
100
23
99
(Fer4_7);(NADHdh_A3)
1
56
56
60
60
7
329
100
18
93
(Fer4_7);(NDUFA12)
1
62
62
62
62
26
1933
100
19
100
(Fer4_7);(Oxidored_q6)
1
85
93
85
93
1
1280
100
29
100
(Fer4_7);(zf-CHCC)
1
63
63
63
63
25
946
100
17
100
(GRIM-19);(MWFE)
1
61
61
64
64
21
570
100
18
95
(GRIM-19);(NADHdh)
1
65
65
65
65
22
919
100
17
100
(GRIM-19);(NADHdh_A3)
1
56
56
59
59
21
576
100
20
95
(GRIM-19);(Ndufs5)
1
59
59
63
63
22
1259
100
19
94
(GRIM-19);(Oxidored_q3)
1
53
53
64
64
0
729
100
17
83
(MWFE);(NADHdh)
1
65
65
65
65
2
1534
100
17
100
(MWFE);(Oxidored_q3)
1
57
57
60
60
1
294
100
12
95
(NADH_B2);(NDUF_B12)
1
56
56
56
56
21
844
100
11
100
(NADH_B2);(NDUF_B7)
1
54
54
56
56
22
701
100
11
96
(NADH_B2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
57
57
57
57
21
1450
100
11
100
(NADH_oxidored);(NDUF_B5)
1
50
50
52
52
24
636
100
14
96
(NADH_oxidored);(NDUFB10)
1
45
45
48
48
9
317
100
7
94
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)
1
51
51
52
52
67
735
100
14
98
(NADHdh);(NADHdh_A3)
1
65
65
65
65
11
659
100
17
100
(NADHdh);(NDUFA12)
1
31
31
42
42
26
227
100
10
74
(NADHdh);(Oxidored_q3)
1
80
85
83
88
0
1030
100
25
96
(NADHdh);(Oxidored_q4)
1
83
88
83
88
3
2713
100
24
100
(NADHdh);(Oxidored_q6)
1
80
85
80
85
0
1175
100
22
100
(NADHdh_A3);(Oxidored_q4)
1
56
56
64
64
22
343
100
16
88
(NDUF_B12);(PP-binding)
1
54
54
57
57
0
624
100
13
95
(NDUF_B12);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
54
54
57
57
31
808
100
13
95
(NDUF_B4);(NDUF_B8)
1
49
49
54
54
75
1799
100
8
91
(NDUF_B4);(NDUFB10)
1
51
51
54
54
9
381
100
18
94
(NDUF_B4);(Oxidored_q5_N)_(Proton_antipo_M)
1
54
54
62
62
61
1304
100
17
87
(NDUF_B4);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
54
54
61
61
61
870
100
17
89
(NDUF_B5);(NDUF_B6)
1
45
45
48
48
73
254
100
7
94
(NDUF_B5);(NDUF_C2)
1
49
49
52
52
24
682
100
14
94
(NDUF_B5);(NDUFB10)
1
52
52
52
52
9
1080
100
13
100
(NDUF_B5);(Ndufs5)
1
49
49
52
52
70
970
100
8
94
(NDUF_B5);(Oxidored_q5_N)_(Proton_antipo_M)
1
53
53
53
53
24
1176
100
13
100
(NDUF_B5);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
46
46
52
52
54
297
100
9
88
(NDUF_B6);(NDUF_B7)
1
47
47
48
48
69
774
100
6
98
(NDUF_B6);(NDUFB10)
1
48
48
52
52
9
1179
100
6
92
(NDUF_B6);(PP-binding)
1
49
49
52
52
5
525
100
14
94
(NDUF_B6);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
48
48
52
52
64
902
100
6
92
(NDUF_B7);(NDUF_B8)
1
52
52
52
52
21
1325
100
10
100
(NDUF_B7);(NDUFB10)
1
51
51
56
56
9
529
100
12
91
(NDUF_B7);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
57
57
61
61
23
868
100
18
93
(NDUF_B8);(Oxidored_q5_N)_(Proton_antipo_M)
1
50
50
53
53
21
494
100
10
94
(NDUF_B8);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
53
53
53
53
21
1644
100
9
100
(NDUF_C2);(NDUFB10)
1
53
53
53
53
9
707
100
15
100
(NDUF_C2);(Ndufs5)
1
30
30
41
41
70
225
100
7
73
(NDUF_C2);(Oxidored_q5_N)_(Proton_antipo_M)
1
43
43
57
57
67
245
100
9
75
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
53
53
53
53
42
1000
100
13
100
(NDUFA12);(Oxidored_q6)
1
59
59
62
62
26
304
100
20
95
(NDUFA12);(zf-CHCC)
1
53
53
56
56
26
630
100
15
95
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)
1
52
52
61
61
9
747
100
17
85
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
52
52
61
61
9
1069
100
17
85
(Ndufs5);(Oxidored_q2)
1
64
64
64
64
22
495
100
17
100
(Ndufs5);(Oxidored_q3)
1
51
51
63
63
51
786
100
18
81
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
52
52
52
52
54
876
100
13
100
(Oxidored_q2);(Oxidored_q3)
1
84
89
84
89
0
2816
100
25
100
(Oxidored_q2);(Oxidored_q4)
1
79
84
84
89
1
409
100
26
94
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
53
53
53
53
6
1625
100
13
100
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
57
57
61
61
6
489
100
21
93
(Oxidored_q3);(Oxidored_q4)
1
82
87
84
89
0
1805
100
25
98
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
50
50
53
53
0
753
100
14
94
(Oxidored_q4);(Oxidored_q6)
1
44
49
66
71
24
510
100
27
67
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)
1
53
53
53
53
54
1173
100
13
100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_N)_(Proton_ antipo_M)_(NADH5_C)
1
64
64
64
64
28
2222
100
19
100
(Oxidored_q5_N)_(Proton_antipo_M);(Tim17)
1
45
45
57
57
64
219
100
16
79
(PP-binding);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
46
46
52
52
0
290
100
15
88
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)
1
49
49
53
53
41
971
100
14
92
(Proton_antipo_M)_(NADH_dehy_S2_C);(Tim17)
1
50
50
52
52
54
516
100
14
96
(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C);(Tim17)
1
48
48
57
57
20
597
100
19
84
(2Fe-2S_thioredx);(NDUFV3)
1
47
47
47
47
70
996
100
11
100
(CHCH);(GRIM-19)
1
58
58
58
58
8
1714
100
14
100
(CHCH);(MWFE)
1
58
58
58
58
8
943
100
14
100
(CHCH);(NADHdh)
1
38
38
51
51
57
258
100
18
75
(CHCH);(NADHdh_A3)
1
51
51
55
55
39
1103
100
14
93
(CHCH);(NDUF_B5)
1
47
47
51
51
24
619
100
13
92
(CHCH);(NDUF_C2)
1
50
50
51
51
42
643
100
14
98
(CHCH);(Ndufs5)
1
48
48
55
55
57
537
100
15
87
(CHCH);(Oxidored_q5_N)_(Proton_antipo_M)
1
44
44
47
47
67
257
100
7
94
(CHCH);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
44
44
47
47
57
258
100
7
94
(Complex1_30kDa);(NmrA)
1
36
36
39
39
82
544
100
6
92
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(NDUFV3)
1
47
47
47
47
70
1135
100
11
100
(Complex1_LYR);(NmrA)
1
36
36
39
39
82
382
100
6
92
(dNK);(NADH_dh_m_C1)
1
48
48
51
51
58
584
100
15
94
(ETC_C1_NDUFA4);(NDUFV3)
1
39
39
42
42
70
261
100
10
93
(ETC_C1_NDUFA4);(NmrA)
1
36
36
39
39
82
348
100
6
92
(NADH_dh_m_C1);(NDUF_C2)
1
51
51
51
51
42
853
100
14
100
(NmrA);(Oxidored_q6)
1
36
36
39
39
82
681
100
6
92
(NmrA);(zf-CHCC)
1
36
36
39
39
82
514
100
6
92
(2Fe-2S_thioredx);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4 )_(Molybdopterin)_(NADH_dhqG_C)
1
39
39
39
39
46
723
100
8
100
(CI-B14_5a);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Mol ybdopterin)_(NADH_dhqG_C)
1
33
33
36
36
84
493
100
9
92
(Complex1_30kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)
1
38
38
39
39
49
682
100
8
97
(Complex1_49kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)
1
39
39
39
39
54
865
100
8
100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(Fer2_4)_(NADH-G_4Fe-4S_ 3)_(Molybdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)
1
39
39
39
39
54
1307
100
8
100
(Complex1_LYR);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_( Molybdopterin)_(NADH_dhqG_C)
1
36
36
39
39
32
569
100
8
92
(ETC_C1_NDUFA4);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_ (Molybdopterin)_(NADH_dhqG_C)
1
39
39
39
39
38
1954
100
8
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(Fer4_7)
1
37
37
39
39
54
523
100
8
95
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(L51_S25_CI-B8)
1
39
39
39
39
39
1199
100
8
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(NDUFA12)
1
39
39
39
39
34
664
100
8
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(zf-CHCC)
1
38
38
39
39
31
470
100
8
97
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)
1
197
210
197
210
0
763
90
12
100
(V-set)_(C1-set);(V-set_2)_(C1-set)
1
282
326
283
330
11
1613
100
87
100
(V-set)_(C1-set);(V-set_2)_(C1-set)
2
24
32
283
330
14
366
0
0
8
(V-set)_(C1-set);(V-set_2)_(C1-set)
3
21
22
283
330
16
360
0
0
7
(Proteasome);(Proteasome)_(Pr_beta_C)
1
90
369
94
473
3
1140
100
74
96
(Proteasome);(Proteasome)_(Pr_beta_C)
2
78
354
94
473
13
1388
100
74
83
(Proteasome);(Proteasome)_(Pr_beta_C)
3
78
292
94
473
13
865
100
72
83
(Proteasome);(Proteasome_A_N)_(Proteasome)
1
117
408
117
506
2
491
100
67
100
(Proteasome);(Proteasome_A_N)_(Proteasome)
2
117
408
117
506
2
427
100
66
100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)
1
94
311
94
473
4
621
100
68
100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)
2
94
369
94
473
8
610
100
71
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)
1
165
178
165
178
0
769
88
10
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)
1
169
182
169
182
3
940
88
10
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)
1
125
138
126
139
5
463
85
12
99
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)
1
187
200
189
202
4
664
90
10
99
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)
1
186
199
186
199
3
509
89
10
100
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)
2
139
152
186
199
2
277
86
11
75
(Ribosomal_L13);(Ribosomal_L18A)
1
186
199
186
199
27
692
89
10
100
(Ribosomal_L13);(Ribosomal_L35Ae)
1
145
148
156
169
2
239
93
11
93
(Ribosomal_L13e);(Ribosomal_L15e)
1
188
201
188
201
24
509
90
10
100
(Ribosomal_L13e);(Ribosomal_L18)
1
151
164
158
171
5
234
87
10
96
(Ribosomal_L13e);(Ribosomal_L27A)
1
188
201
188
201
2
1458
90
9
100
(Ribosomal_L13e);(Ribosomal_L29)
1
194
207
194
207
2
909
90
10
100
(Ribosomal_L13e);(Ribosomal_L36e)
1
184
197
184
197
4
642
89
10
100
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
104
104
111
111
31
219
96
7
94
(Ribosomal_L15e);(Ribosomal_L29)
1
190
203
190
203
7
355
90
10
100
(Ribosomal_L15e);(Ribosomal_L36e)
1
189
202
189
202
7
528
90
10
100
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
186
199
188
201
38
268
89
10
99
(Ribosomal_L15e);(Ribosomal_L7Ae)
1
174
247
174
247
2
938
91
9
100
(Ribosomal_L18);(Ribosomal_L27A)
1
190
203
194
207
3
863
90
9
98
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)
1
170
183
171
184
5
256
89
9
99
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
194
207
194
207
0
1113
90
10
100
(Ribosomal_L18A);(Ribosomal_L21e)
1
186
199
186
199
0
889
89
10
100
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)
1
191
204
191
204
26
474
90
10
100
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)
1
187
200
190
203
5
310
90
10
98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)
1
201
273
201
274
0
1253
92
7
100
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)
1
146
159
146
159
1
299
87
11
100
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)
1
187
200
187
200
0
598
90
10
100
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)
1
179
192
179
192
0
858
89
9
100
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)
1
162
175
170
183
4
222
88
10
95
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)
1
144
157
146
159
9
373
87
11
99
(Ribosomal_L24e);(Ribosomal_L3)
1
186
199
186
199
0
584
89
11
100
(Ribosomal_L27A);(Ribosomal_L36e)
1
148
161
156
169
4
239
87
9
95
(Ribosomal_L29);(Ribosomal_L37e)
1
50
50
57
57
28
216
100
4
88
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)
1
186
199
186
199
11
1004
89
10
100
(Ribosomal_L34e);(Ribosomal_L7Ae)
1
187
200
189
202
4
258
90
10
99
(Ribosomal_L36e);(Ribosomal_L7Ae)
1
155
168
155
168
4
304
88
12
100
(Ribosomal_L37e);(Ribosomal_L39)
1
126
139
134
147
34
226
85
12
94
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)
1
173
186
176
189
42
241
89
10
98
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)
1
210
223
210
223
2
467
90
10
100
(Ribosom_S12_S23);(Ribosomal_S30)
1
161
174
162
175
10
445
87
9
99
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)
1
72
72
87
87
29
354
99
0
83
(Ribosomal_L7Ae);(Ribosomal_S27)
1
72
85
78
91
3
537
75
11
92
(Ribosomal_S11);(Ribosomal_S26e)
1
187
200
187
200
2
1107
89
6
100
(Ribosomal_S11);(Ribosomal_S28e)
1
90
90
103
103
4
289
99
7
87
(Ribosomal_S11);(Ribosomal_S3Ae)
1
231
244
233
246
0
858
91
9
99
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)
1
21
21
22
22
34
252
100
14
95
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)
1
229
242
232
245
0
714
91
8
99
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)
1
64
64
77
77
2
234
98
12
83
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)
1
58
60
71
73
66
209
83
12
82
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)
1
221
234
221
234
3
720
91
8
100
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)
1
124
124
124
124
1
1256
99
8
100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)
1
126
126
126
126
0
1492
99
8
100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)
1
123
123
123
123
3
530
99
8
100
(Ribosomal_S21e);(Ribosomal_S27e)
1
77
90
78
91
36
426
78
9
99
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)
1
201
214
201
214
2
1317
90
8
100
(Ribosomal_S21e);(Ribosomal_S8)
1
174
187
176
189
3
266
88
8
99
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)
1
213
226
213
226
0
536
91
9
100
(Ribosomal_S24e);(S4)
1
103
116
112
125
30
227
83
11
92
(Ribosomal_S26e);(Ribosomal_S3Ae)
1
126
139
137
150
6
265
84
6
92
(Ribosomal_S27e);(Ribosomal_S7e)
1
74
74
82
82
2
332
97
7
90
(Ribosomal_S27e);(Ribosomal_S8)
1
218
231
218
231
0
477
90
9
100
(Ribosomal_S30);(S4)
1
158
171
158
171
1
506
87
11
100
(Ribosomal_S5)_(Ribosomal_S5_C);(S4)
1
188
201
195
208
4
360
89
9
96
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )
1
193
206
195
208
0
321
90
9
99
(Ribosomal_S7e);(Ribosomal_S8)
1
226
239
226
239
7
470
91
8
100
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)
1
178
191
178
191
0
368
89
9
100
(Ribosomal_L16);(Ribosomal_L21e)
1
61
74
72
85
4
215
72
7
85
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)
1
130
143
137
150
3
260
85
6
95
(Ribosomal_L21e);(Ribosomal_L29e)
1
172
185
172
185
0
477
89
9
100
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)
1
84
97
84
97
32
662
78
9
100
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)
1
39
39
51
51
57
230
100
15
76
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)
1
28
41
28
41
59
265
51
5
100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
1
140
168
159
196
4
594
100
62
88
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
2
131
157
159
196
3
275
100
63
82
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
3
116
127
159
196
3
377
100
65
73
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)
1
136
164
151
188
4
524
100
63
90
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)
2
135
162
151
188
12
572
100
63
89
(ATP-synt);(ATP-synt_DE_N)
1
98
99
102
111
2
1444
100
61
96
(ATP-synt_C);(ATP-synt_DE_N)
1
84
84
93
101
2
272
100
67
90
(ATP-synt_C);(ATP-synt_DE_N)
2
73
73
93
101
2
254
100
67
78
(ATP-synt_C);(ATP-synt_DE_N)
3
45
45
93
101
25
222
100
91
48
(ATP-synt);(ATP-synt_Eps)
1
104
115
104
115
10
998
100
74
100
(ATP-synt_A);(ATP-synt_C)
1
77
77
109
117
3
364
100
42
71
(ATP-synt_A);(ATP-synt_C)
2
53
53
109
117
3
607
100
8
49
(ATP-synt_A);(ATP-synt_C)
3
52
52
109
117
3
437
100
10
48
(ATP-synt_A);(ATP-synt_C)
4
38
38
109
117
12
580
100
82
35
(ATP-synt_A);(ATP-synt_C)
5
33
33
109
117
15
494
100
91
30
(ATP-synt_A);(ATP-synt_C)
6
24
24
109
117
15
289
100
17
22
(ATP-synt_DE_N);(ATP-synt_Eps)
1
83
84
83
84
12
1040
100
69
100
(ATP_synt_H);(V_ATPase_I)
1
29
29
29
29
22
1991
100
0
100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)
1
24
24
24
24
51
1768
100
0
100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)
2
24
24
24
24
51
1090
100
0
100
(ATP-synt_ab_N)_(ATP-synt_ab);(vATP-synt_E)
1
23
23
23
23
34
1256
100
0
100
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)
1
30
34
35
42
26
457
100
26
86
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)
2
30
34
35
42
26
542
100
29
86
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)
3
27
31
35
42
26
323
100
32
77
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)
1
27
27
30
30
23
876
100
0
90
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)
2
27
27
30
30
23
430
100
0
90
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)
3
25
25
30
30
24
600
100
0
83
(ATP-synt_C)_(ATP-synt_C);(V_ATPase_I)
1
27
27
30
30
29
738
100
0
90
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)
1
35
35
35
35
31
615
100
0
100
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)
2
30
30
35
35
47
461
100
0
86
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)
3
29
29
35
35
42
322
100
0
83
(ATP-synt_D);(ATP-synt_F)
1
49
54
50
57
10
1439
100
28
98
(ATP-synt_D);(vATP-synt_AC39)
1
33
33
37
37
12
1125
100
15
89
(ATP-synt_S1);(vATP-synt_AC39)
1
27
27
30
30
23
495
100
0
90
(V-ATPase_G);(vATP-synt_E)
1
36
37
36
37
31
1672
100
5
100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)
1
25
34
25
35
13
2222
97
47
100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)
2
25
34
25
35
13
1414
97
44
100
(Ribosomal_L18);(Ribosomal_L28e)
1
85
85
90
90
5
228
99
4
94
(Ribosomal_L28e);(Ribosomal_L32e)
1
88
88
94
94
0
761
99
3
94
(Ribosomal_L28e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
94
94
94
94
13
940
99
4
100
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)
1
74
74
75
75
87
500
99
1
99
(Ribosomal_L32e);(Ribosomal_L6e_N)_(Ribosomal_L6e)
1
65
65
68
68
87
227
98
2
96
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)
1
79
79
79
79
41
869
99
1
100
(Ribosomal_L4)_(Ribos_L4_asso_C);(Ribosomal_L6e_N)_(Ribosoma l_L6e)
1
72
72
73
73
44
351
99
1
99
(Chloroa_b-bind);(PsaA_PsaB)
1
22
24
24
27
53
573
100
25
92
(Chloroa_b-bind);(PSI_PsaF)
1
23
25
29
35
41
349
100
20
79
(Fer4_21);(PsaA_PsaB)
1
23
25
23
29
21
403
100
16
100
(Fer4_21);(PsaA_PsaB)
2
23
29
23
29
0
832
100
28
100
(Fer4_21);(PsaD)
1
23
25
23
29
21
1460
100
16
100
(Fer4_21);(PSI_PsaE)
1
23
26
23
29
3
497
100
15
100
(Cytochrom_B559);(PsbJ)
1
27
75
27
82
7
385
100
25
100
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)
1
26
68
26
81
0
385
100
26
100
(MSP);(Photo_RC)
1
28
62
28
83
35
707
100
24
100
(MSP);(Photo_RC)
2
27
71
28
83
36
671
100
27
96
(MSP);(PSII)
1
28
62
28
83
35
1313
100
26
100
(MSP);(PSII)
2
25
69
28
83
36
771
100
25
89
(MSP);(PSII)
3
24
67
28
83
39
405
84
6
86
(Photo_RC);(PsbH)
1
30
74
30
85
55
270
100
32
100
(Photo_RC);(PsbI)
1
30
69
30
85
12
868
100
29
100
(Photo_RC);(PsbL)
1
30
74
30
85
68
400
100
23
100
(Photo_RC);(PsbL)
2
27
66
30
85
76
260
100
33
90
(Photo_RC);(PsbT)
1
30
69
30
85
40
512
100
32
100
(Photo_RC);(PsbT)
2
26
69
30
85
40
220
100
25
87
(Photo_RC);(PsbX)
1
29
72
29
84
3
612
100
28
100
(PsbH);(PsbX)
1
28
81
28
83
3
304
100
25
100
(PsbH);(PSII)
1
30
84
30
85
55
1909
100
36
100
(PsbI);(PSII)
1
30
64
30
85
64
445
100
31
100
(PsbK);(PSII)
1
31
74
31
86
17
813
100
32
100
(PsbK);(PSII_Ycf12)
1
21
64
21
76
4
506
100
22
100
(PsbK);(Ycf9)
1
28
73
28
83
6
269
100
21
100
(PsbL);(PsbM)
1
29
84
29
84
4
815
100
37
100
(PsbL);(PsbT)
1
30
85
30
85
12
596
100
38
100
(PsbL);(PSII)
1
30
79
30
85
12
605
100
29
100
(PSII);(Ycf9)
1
29
71
29
84
6
439
100
20
100
(PSII_Ycf12);(Ycf9)
1
21
64
21
76
0
401
100
20
100
(Cytochrom_C550);(PsbU)
1
20
57
20
75
31
650
100
32
100
(MSP);(PsbU)
1
20
56
20
75
31
520
100
25
100
(PsbU);(PSII)
1
20
53
20
75
31
433
100
26
100
(PsbU);(PSII)
2
20
54
20
75
31
469
100
31
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)
1
28
53
39
69
84
925
100
40
72
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)_(W2)
1
25
26
25
26
28
1206
100
31
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)
1
59
59
59
59
41
464
98
0
100
(GP120);(V-set_2)_(C1-set)
1
37
47
86
111
12
970
100
47
43
(Hemagglutinin);(V-set)_(C1-set)
1
34
36
130
153
10
385
92
47
26
(Hemagglutinin);(V-set)_(C1-set)
2
28
30
130
153
10
416
60
20
22
(Lipoprotein_18);(YfiO)
1
36
36
41
42
82
2205
100
78
88
(POTRA)_(POTRA)_(POTRA)_(POTRA)_(POTRA)_(Omp85);(PQQ_2)_(PQQ _3)_(PQQ_3)
1
33
33
38
39
2
1189
100
76
87
(POTRA)_(POTRA)_(POTRA)_(POTRA)_(POTRA)_(Omp85);(YfiO)
1
35
35
40
41
5
1202
100
77
88
(Pico_P1A)_(Rhv);(Rhv)
1
23
28
23
31
7
1801
96
18
100
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)
1
39
309
41
409
11
2555
100
93
95
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt)
1
48
59
54
68
4
572
100
37
89
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt)
2
37
43
54
68
21
390
100
33
69
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt)
3
30
41
54
68
21
244
100
46
56
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt)
1
34
34
35
35
21
468
100
6
97
(BOP1NT)_(WD40)_(WD40);(Ribosomal_L36e)
1
21
21
21
21
40
872
100
0
100
(BOP1NT)_(WD40)_(WD40);(Ribosomal_L7Ae)
1
21
21
21
21
40
1374
100
0
100
(NADHdh_A3);(NADHdh)
1
61
61
61
61
21
663
100
11
100
(Proteasome_A_N)_(Proteasome);(Proteasome)
1
25
114
25
114
13
451
100
82
100
(Proteasome_A_N)_(Proteasome);(Proteasome)_(Pr_beta_C)
1
24
111
24
113
14
611
100
82
100
(V-set_2)_(C1-set);(V-set)_(C1-set)
1
22
24
22
24
23
1126
100
42
100