PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7WPF

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
R	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H1	13	H1-13-*	-1	KASGGTFSSYAIS	BBBEEBAAABBBB
R	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H2	10	H2-10-1	12	RIIPIFGTAN	BBBAAALBBB
R	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	50.0	H3	16	H3-16-*	-1	ASLASYSSgwEDVFDI
R	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H4	8	H4-8-1	9	ADESTSTA	BBAAALBB
S	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	54.5	L1	11	L1-11-*	-1	RASQGISSWLA	BBABBBABLBB
S	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L2	8	L2-8-*	-1	YDASNLET	ABBLBBBB
S	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L3	9	L3-9-2	13	QQYDNlPLT	BBAABABBB
S	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
T	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-*	-1	AASGRTISRYAMS	BBBLBBAAABBBB
T	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	CDRLenMismatch	-1.0	H2	10	H2-10-*	-1	VARRSGDGAF	BBBAALAEBB
T	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	0.0	H3	14	H3-14-*	-1	AIDSDTFYSGSYDY	BBBBBBLBABBBBB
T	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	87.5	H4	8	H4-8-1	22	RDDAKNTV	BBAAALBB
U	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H1	13	H1-13-*	-1	KASGGTFSSYAIS	BBBEEBAAABBBB
U	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H2	10	H2-10-1	15	RIIPIFGTAN	BBBAAALBBB
U	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	50.0	H3	16	H3-16-*	-1	ASLASYSSgwEDVFDI
U	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H4	8	H4-8-1	19	ADESTSTA	BBAAALBB
V	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	54.5	L1	11	L1-11-*	-1	RASQGISSWLA	BBABBBBLBBB
V	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L2	8	L2-8-*	-1	YDASNLET	ABAABBBB
V	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L3	9	L3-9-2	14	QQYDNlPLT	BBAABABBB
V	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	20	GSGTDF	EBEABB
W	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-1	22	AASGRTISRYAMS	BBBLBBAAABBBB
W	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	CDRLenMismatch	-1.0	H2	10	H2-10-*	-1	VARRSGDGAF	BBBAALBEBB
W	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	0.0	H3	14	H3-14-*	-1	AIDSDTFYSGSYDY	BBBBBBLBABBBBB
W	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	87.5	H4	8	H4-8-1	9	RDDAKNTV	BBAAALBB
X	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H1	13	H1-13-*	-1	KASGGTFSSYAIS	BBBEEBAAABBBB
X	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H2	10	H2-10-1	13	RIIPIFGTAN	BBBAAALBBB
X	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	50.0	H3	16	H3-16-*	-1	ASLASYSSgwEDVFDI
X	heavy	Mus.musculus	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H4	8	H4-8-1	10	ADESTSTA	BBAAALBB
Y	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	54.5	L1	11	L1-11-*	-1	RASQGISSWLA	BBABBBABLBB
Y	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L2	8	L2-8-*	-1	YDASNLET	ABBLBBBB
Y	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L3	9	L3-9-2	15	QQYDNlPLT	BBAABABBB
Y	kappa	Mus.musculus	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	15	GSGTDF	EBEABB
Z	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-1	21	AASGRTISRYAMS	BBBLBBAAABBBB
Z	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	CDRLenMismatch	-1.0	H2	10	H2-10-*	-1	VARRSGDGAF	BBBAALBEBB
Z	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	0.0	H3	14	H3-14-*	-1	AIDSDTFYSGSYDY	BBBBBBLBABBBBB
Z	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	87.5	H4	8	H4-8-1	18	RDDAKNTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022