PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7VSW

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	11	RASQSISSYLN	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L2	8	L2-8-4	13	YAASSLQS	BEAABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	10	QQSYSTPLT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H1	15	H1-15-*	-1	TVSGGSVSsgSYYWS	BBBLBBABBBLBBBB
B	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H2	9	H2-9-1	12	YIYYSGSTN	BBBAALBBB
B	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H3	11	H3-11-*	-1	AREGKNGAFDI	BBBBABEBLAB
B	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H4	8	H4-8-1	12	VDTSKNQF	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	11	RASQSISSYLN	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L2	8	L2-8-4	14	YAASSLQS	BEAABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	10	QQSYSTPLT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H1	15	H1-15-*	-1	TVSGGSVSsgSYYWS	BBBLBBABBBLBBBB
F	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H2	9	H2-9-1	12	YIYYSGSTN	BBBAALBBB
F	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H3	11	H3-11-*	-1	AREGKNGAFDI	BBBBABEBLAB
F	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H4	8	H4-8-1	12	VDTSKNQF	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	11	RASQSISSYLN	BBABBAEABBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L2	8	L2-8-4	14	YAASSLQS	BEAABBBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	10	QQSYSTPLT	BBAABBbBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
J	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H1	15	H1-15-*	-1	TVSGGSVSsgSYYWS	BBBLBBABBEBBBBB
J	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H2	9	H2-9-1	13	YIYYSGSTN	BBBAALBBB
J	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H3	11	H3-11-*	-1	AREGKNGAFDI	BBBBABEBLAB
J	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H4	8	H4-8-1	12	VDTSKNQF	BBAAALBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	11	RASQSISSYLN	BBABBAEABBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L2	8	L2-8-4	14	YAASSLQS	BEAABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	10	QQSYSTPLT	BBAABBbBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
N	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H1	15	H1-15-*	-1	TVSGGSVSsgSYYWS	BBBLBBABBEBBBBB
N	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H2	9	H2-9-1	12	YIYYSGSTN	BBBAALBBB
N	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H3	11	H3-11-*	-1	AREGKNGAFDI	BBBBABEBLAB
N	heavy	Homo.sapiens	Hu_IGHV4-61*01	100.0	Hu_IGHV4-61*01	100.0	H4	8	H4-8-1	12	VDTSKNQF	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022