PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7VNE

#CDRs = 4; #Clusters = 5.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
U	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	Hu_IGHV3-23*05	53.8	H1	13	H1-13-*	-1	AASDSSFYDYEMS	BBABAAAABaBBB
U	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	SMYPSGRTY	BBBAALBBB
U	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	Hu_IGHV3-23*05	0.0	H3	12	H3-12-*	-1	VSNWASGSTGDY	BBLAAAEAAABB
U	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	15	RDNSKNTL	BBAAALBB
V	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	Hu_IGHV3-23*05	53.8	H1	13	H1-13-*	-1	AASDSSFYDYEMS	BBABAAAABaBBB
V	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	CDRLenMismatch	-1.0	H2	9	H2-9-1	23	SMYPSGRTY	BBBAALBBB
V	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	Hu_IGHV3-23*05	0.0	H3	12	H3-12-*	-1	VSNWASGSTGDY	BBLAAAEAAABB
V	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	18	RDNSKNTL	BBAAALBB
W	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	Hu_IGHV3-23*05	53.8	H1	13	H1-13-*	-1	AASDSSFYDYEMS	BBABAAAABaBBB
W	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	CDRLenMismatch	-1.0	H2	9	H2-9-1	17	SMYPSGRTY	BBBAALBBB
W	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	Hu_IGHV3-23*05	0.0	H3	12	H3-12-*	-1	VSNWASGSTGDY	BBLAAAEAAABB
W	heavy	Homo.sapiens	Hu_IGHV3-23*05	80.8	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	25	RDNSKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022