PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7VGS

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Mus.musculus	Mo_IGKV3-4*01	97.1	Mo_IGKV3-4*01	86.7	L1	15	L1-15-*	-1	KASQSIDydgdNYMN	BBAAABABLLBBBBB
C	kappa	Mus.musculus	Mo_IGKV3-4*01	97.1	Mo_IGKV3-4*01	75.0	L2	8	L2-8-*	-1	YTTSNLES	ABLBLBBB
C	kappa	Mus.musculus	Mo_IGKV3-4*01	97.1	Mo_IGKV3-4*01	85.7	L3	9	L3-9-*	-1	QQNNEDPYT	BALABABBB
C	kappa	Mus.musculus	Mo_IGKV3-4*01	97.1	Mo_IGKV3-4*01	100.0	L4	6	L4-6-1	15	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-37*01	94.5	Mo_IGHV1-37*01	84.6	H1	13	H1-13-*	-1	KTSGYSFTGYTMN	BBBLBBABLBALB
D	heavy	Mus.musculus	Mo_IGHV1-37*01	94.5	Mo_IGHV1-37*01	80.0	H2	10	H2-10-*	-1	LINPYNGDTS	BBBAABELBB
D	heavy	Mus.musculus	Mo_IGHV1-37*01	94.5	Mo_IGHV1-37*01	0.0	H3	6	H3-6-*	-1	EVINTY	BAALAB
D	heavy	Mus.musculus	Mo_IGHV1-37*01	94.5	Mo_IGHV1-37*01	100.0	H4	8	H4-8-1	13	VDKSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV3-4*01	97.1	Mo_IGKV3-4*01	86.7	L1	15	L1-15-*	-1	KASQSIDydgdNYMN	BBAAABABLLBBBBB
E	kappa	Mus.musculus	Mo_IGKV3-4*01	97.1	Mo_IGKV3-4*01	75.0	L2	8	L2-8-*	-1	YTTSNLES	ABLBLBBB
E	kappa	Mus.musculus	Mo_IGKV3-4*01	97.1	Mo_IGKV3-4*01	85.7	L3	9	L3-9-*	-1	QQNNEDPYT	BALABABBB
E	kappa	Mus.musculus	Mo_IGKV3-4*01	97.1	Mo_IGKV3-4*01	100.0	L4	6	L4-6-1	15	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV1-37*01	94.5	Mo_IGHV1-37*01	84.6	H1	13	H1-13-*	-1	KTSGYSFTGYTMN	BBBLBBABLBALB
F	heavy	Mus.musculus	Mo_IGHV1-37*01	94.5	Mo_IGHV1-37*01	80.0	H2	10	H2-10-*	-1	LINPYNGDTS	BBBAABELBB
F	heavy	Mus.musculus	Mo_IGHV1-37*01	94.5	Mo_IGHV1-37*01	0.0	H3	6	H3-6-*	-1	EVINTY	BAALAB
F	heavy	Mus.musculus	Mo_IGHV1-37*01	94.5	Mo_IGHV1-37*01	100.0	H4	8	H4-8-1	13	VDKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022