PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7VGR

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	93.3	L1	15	L1-15-*	-1	RASESVdsfgNSFMH	BBABBABBBLBALBB
C	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L2	8	L2-8-1	15	YRASNLES	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	85.7	L3	9	L3-9-2	19	QQSSEDPYT	BBAABABBB
C	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L4	6	L4-6-*	-1	GSRTDF	EBLABB
D	heavy	Mus.musculus	Mo_IGHV1-80*01	94.5	Mo_IGHV1-80*01	76.9	H1	13	H1-13-*	-1	KGSGYVFSNYWMN	BBBLBBAAABBBA
D	heavy	Mus.musculus	Mo_IGHV1-80*01	94.5	Mo_IGHV1-80*01	100.0	H2	10	H2-10-1	11	QIYPGDGDTN	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-80*01	94.5	Mo_IGHV1-80*01	50.0	H3	13	H3-13-*	-1	ASGYLGENYVMDF	BBBAALBAABBAB
D	heavy	Mus.musculus	Mo_IGHV1-80*01	94.5	Mo_IGHV1-80*01	100.0	H4	8	H4-8-1	8	ADKSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	93.3	L1	15	L1-15-*	-1	RASESVdsfgNSFMH	BBABBABBBLBALBB
E	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L2	8	L2-8-1	15	YRASNLES	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	85.7	L3	9	L3-9-2	19	QQSSEDPYT	BBAABABBB
E	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L4	6	L4-6-*	-1	GSRTDF	EBLABB
F	heavy	Mus.musculus	Mo_IGHV1-80*01	94.5	Mo_IGHV1-80*01	76.9	H1	13	H1-13-*	-1	KGSGYVFSNYWMN	BBBLBBAAABBBA
F	heavy	Mus.musculus	Mo_IGHV1-80*01	94.5	Mo_IGHV1-80*01	100.0	H2	10	H2-10-1	11	QIYPGDGDTN	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1-80*01	94.5	Mo_IGHV1-80*01	50.0	H3	13	H3-13-*	-1	ASGYLGENYVMDF	BBBAALBAABBAB
F	heavy	Mus.musculus	Mo_IGHV1-80*01	94.5	Mo_IGHV1-80*01	100.0	H4	8	H4-8-1	8	ADKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022