PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7UL7

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	75.0	L1	12	L1-12-*	-1	RASQSViSYYVA	BBABBBBAAABB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	100.0	L2	8	L2-8-*	-1	YGASSRAT	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	85.7	L3	10	L3-10-*	-1	QYYGSSPlWA	BBBEEBbABB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	Hu_IGHV3-21*01	84.6	H1	13	H1-13-1	14	AAAGFTFKSYSMN	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	CDRLenMismatch	-1.0	H2	11	H2-11-*	-1	SITSRGGsKTY	BBBBLEBABBB
E	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	Hu_IGHV3-21*01	100.0	H3	15	H3-15-*	-1	ARSRHSTsQPSYMDV
E	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	Hu_IGHV3-21*01	87.5	H4	8	H4-8-1	14	RDNAKQSL	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	75.0	L1	12	L1-12-1	20	RASQSViSYYVA	BBABBBBAAABB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	100.0	L2	8	L2-8-*	-1	YGASSRAT	BEABBBBA
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	85.7	L3	10	L3-10-*	-1	QYYGSSPlWA	BBBEEBbABB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
G	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	Hu_IGHV3-21*01	84.6	H1	13	H1-13-1	14	AAAGFTFKSYSMN	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	CDRLenMismatch	-1.0	H2	11	H2-11-*	-1	SITSRGGsKTY	BBBBLALABBB
G	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	Hu_IGHV3-21*01	100.0	H3	15	H3-15-*	-1	ARSRHSTsQPSYMDV
G	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	Hu_IGHV3-21*01	87.5	H4	8	H4-8-1	11	RDNAKQSL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	Hu_IGHV3-21*01	84.6	H1	13	H1-13-1	9	AAAGFTFKSYSMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	CDRLenMismatch	-1.0	H2	11	H2-11-*	-1	SITSRGGsKTY	BBBBLEAEBBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	Hu_IGHV3-21*01	100.0	H3	15	H3-15-*	-1	ARSRHSTsQPSYMDV
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	89.0	Hu_IGHV3-21*01	87.5	H4	8	H4-8-1	15	RDNAKQSL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	75.0	L1	12	L1-12-1	19	RASQSViSYYVA	BBABBBBAAABB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	18	YGASSRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	85.7	L3	10	L3-10-*	-1	QYYGSSPlWA	BBBEEBbABB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	91.3	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022