PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7UDS

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	61.5	H1	13	H1-13-1	14	TASGFNFNKYNMN	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	70.0	H2	10	H2-10-2	16	SISALSTYIY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	100.0	H3	14	H3-14-2	17	AREIRRASTWSADL	BBBBBBLLBBBBAB
D	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	100.0	H4	8	H4-8-1	12	RDNAKNSL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	26	RASQSISSSLN	BBABBAEBBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	23	YAAVNLET	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	42.9	L3	7	L3-7-*	-1	QQSDTRT
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	8	GFGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	61.5	H1	13	H1-13-1	14	TASGFNFNKYNMN	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	70.0	H2	10	H2-10-2	16	SISALSTYIY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	100.0	H3	14	H3-14-2	19	AREIRRASTWSADL	BBBBBBLLBBBBAB
F	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	100.0	H4	8	H4-8-1	11	RDNAKNSL	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	25	RASQSISSSLN	BBABBAEBBBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	17	YAAVNLET	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	42.9	L3	7	L3-7-*	-1	QQSDTRT
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	7	GFGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	61.5	H1	13	H1-13-1	14	TASGFNFNKYNMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	70.0	H2	10	H2-10-2	16	SISALSTYIY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	100.0	H3	14	H3-14-2	19	AREIRRASTWSADL	BBBBBBLLBBBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	90.4	Hu_IGHV3-21*01	100.0	H4	8	H4-8-1	12	RDNAKNSL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	26	RASQSISSSLN	BBABBAEBBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	18	YAAVNLET	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	42.9	L3	7	L3-7-*	-1	QQSDTRT
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	92.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	8	GFGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022