PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7U8M

#CDRs = 8; #Clusters = 14.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	90.9	L1	11	L1-11-*	-1	RASQSVRSNLA	BBBEBBAABBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	100.0	L2	8	L2-8-4	29	YGASTRAT	BEAABBBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	71.4	L3	9	L3-9-*	-1	QQYNHWLRT	BBBaLLBBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	20	GSGTEF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	69.2	H1	13	H1-13-*	-1	AASGFTFRDSALS	BBBEABALABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	80.0	H2	10	H2-10-*	-1	AISGNGGATY	BBBEBAABlB
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	100.0	H3	24	H3-24-*	-1	AKDEsppiynlmpgYYSTYYYMDV
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	75.0	H4	8	H4-8-1	8	RDNSQTTL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	69.2	H1	13	H1-13-*	-1	AASGFTFRDSALS	BBBEABALABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	80.0	H2	10	H2-10-*	-1	AISGNGGATY	BBBEBAABlB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	100.0	H3	24	H3-24-*	-1	AKDEsppiynlmpgYYSTYYYMDV
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	75.0	H4	8	H4-8-1	8	RDNSQTTL	BBAAALBB
J	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	90.9	L1	11	L1-11-*	-1	RASQSVRSNLA	BBBEBBAABBB
J	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	100.0	L2	8	L2-8-4	29	YGASTRAT	BEAABBBB
J	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	71.4	L3	9	L3-9-*	-1	QQYNHWLRT	BBBaLLBBB
J	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	20	GSGTEF	EBEABB
K	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	69.2	H1	13	H1-13-*	-1	AASGFTFRDSALS	BBBEABALABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	80.0	H2	10	H2-10-*	-1	AISGNGGATY	BBBEBAABlB
K	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	100.0	H3	24	H3-24-*	-1	AKDEsppiynlmpgYYSTYYYMDV
K	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	75.0	H4	8	H4-8-1	8	RDNSQTTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	90.9	L1	11	L1-11-*	-1	RASQSVRSNLA	BBBEBBAABBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	100.0	L2	8	L2-8-4	29	YGASTRAT	BEAABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	71.4	L3	9	L3-9-*	-1	QQYNHWLRT	BBBaLLBBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	92.8	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	21	GSGTEF	EBEABB
N	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	60.0	H1	15	H1-15-2	13	SVSGVSVTSdiYYWT	BBBLBBAABAABBBB
N	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	66.7	H2	9	H2-9-1	11	YIFYNGDTN	BBBAALBBB
N	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	100.0	H3	18	H3-18-*	-1	ARGTEDlgycSSGSCPNH
N	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	75.0	H4	8	H4-8-1	13	IDTSKNEF	BBAAALBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	9	RPSQNIRSFLN	BBABBAEABBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	8	YAASNLQS	BLLABBBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	9	QQSYNTPPT	BBAABBbBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	12	GSGTEF	EBEABB
Q	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	60.0	H1	15	H1-15-2	13	SVSGVSVTSdiYYWT	BBBLBBAABAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	66.7	H2	9	H2-9-1	11	YIFYNGDTN	BBBAALBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	100.0	H3	18	H3-18-*	-1	ARGTEDlgycSSGSCPNH
Q	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	75.0	H4	8	H4-8-1	13	IDTSKNEF	BBAAALBB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	9	RPSQNIRSFLN	BBABBAEABBB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	8	YAASNLQS	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	9	QQSYNTPPT	BBAABBbBB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	12	GSGTEF	EBEABB
T	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	60.0	H1	15	H1-15-2	13	SVSGVSVTSdiYYWT	BBBLBBAABAABBBB
T	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	66.7	H2	9	H2-9-1	11	YIFYNGDTN	BBBAALBBB
T	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	100.0	H3	18	H3-18-*	-1	ARGTEDlgycSSGSCPNH
T	heavy	Homo.sapiens	Hu_IGHV4-61*08	90.4	Hu_IGHV4-61*08	75.0	H4	8	H4-8-1	13	IDTSKNEF	BBAAALBB
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	9	RPSQNIRSFLN	BBABBAEABBB
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	8	YAASNLQS	BLLABBBB
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	9	QQSYNTPPT	BBAABBbBB
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.3	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	12	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022