PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7U0D

#CDRs = 8; #Clusters = 16.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
M	heavy	Homo.sapiens	Hu_IGHV3-30*03	98.6	Hu_IGHV3-30*03	92.3	H1	13	H1-13-1	16	AASGFTLSSYGMH	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV3-30*03	98.6	Hu_IGHV3-30*03	100.0	H2	10	H2-10-2	11	VISYDGSNKY	BBBAALABBB
M	heavy	Homo.sapiens	Hu_IGHV3-30*03	98.6	Hu_IGHV3-30*03	100.0	H3	19	H3-19-*	-1	ARGWAYwellpDYYYGMDV
M	heavy	Homo.sapiens	Hu_IGHV3-30*03	98.6	Hu_IGHV3-30*03	100.0	H4	8	H4-8-1	10	RDNSKNTL	BBAAALBB
N	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	85.7	L1	14	L1-14-1	14	GLSSGSVSTAYFpS	BBAAEBBBAAALBB
N	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	87.5	L2	8	L2-8-1	17	YGTNTRSS	BLLABBBB
N	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	87.5	L3	10	L3-10-*	-1	VLYMGRGIVV	BBBBBLLBBB
N	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	100.0	L4	6	L4-6-2	17	ILGNKA	BBEABB
O	heavy	Homo.sapiens	Hu_IGHV1-58*01	100.0	Hu_IGHV1-58*01	100.0	H1	13	H1-13-*	-1	KASGFTFTSSAVQ	BBBLBBAABBBBB
O	heavy	Homo.sapiens	Hu_IGHV1-58*01	100.0	Hu_IGHV1-58*01	100.0	H2	10	H2-10-*	-1	WIVVGSGNTN
O	heavy	Homo.sapiens	Hu_IGHV1-58*01	100.0	Hu_IGHV1-58*01	100.0	H3	16	H3-16-*	-1	AAPYCSggSCFDGFDI
O	heavy	Homo.sapiens	Hu_IGHV1-58*01	100.0	Hu_IGHV1-58*01	100.0	H4	8	H4-8-*	-1	RDMSTSTA	ALABLLBB
P	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	100.0	L1	12	L1-12-*	-1	RASQSVSsSYLA	BBABBBBBLABB
P	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	100.0	L2	8	L2-8-*	-1	YGASSRAT	BLLABBBA
P	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	85.7	L3	9	L3-9-cis7-*	-1	QQYGNSPWT	BBBLBBbBB
P	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	100.0	L4	6	L4-6-*	-1	GSGTDF	BBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022