PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7T5F

#CDRs = 4; #Clusters = 6.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Camelus.dromedarius	Ca_IGHV1S27*01	94.5	Ca_IGHV1S27*01	69.2	H1	13	H1-13-1	8	AASGFPFHAYYMS	BBBLBBAAABBBB
B	heavy	Camelus.dromedarius	Ca_IGHV1S27*01	94.5	Ca_IGHV1S27*01	40.0	H2	10	H2-10-2	9	HIGNGGIITR	BBBAALABBB
B	heavy	Camelus.dromedarius	Ca_IGHV1S27*01	94.5	Ca_IGHV1S27*01	0.0	H3	11	H3-11-*	-1	TLGTRDDLGPE	BBEBAABAEAB
B	heavy	Camelus.dromedarius	Ca_IGHV1S27*01	94.5	Ca_IGHV1S27*01	100.0	H4	8	H4-8-1	9	RDNAKNTL	BBAAALBB
C	heavy	Camelus.dromedarius	Ca_IGHV1S61*01_VHH	86.3	Ca_IGHV1S61*01_VHH	53.8	H1	13	H1-13-*	-1	AASGSIDSLYHMG	BBABBAAABABBB
C	heavy	Camelus.dromedarius	Ca_IGHV1S61*01_VHH	86.3	Ca_IGHV1S61*01_VHH	33.3	H2	9	H2-9-1	11	RVQDGGSTA	BBBAALBBB
C	heavy	Camelus.dromedarius	Ca_IGHV1S61*01_VHH	86.3	Ca_IGHV1S61*01_VHH	0.0	H3	11	H3-11-*	-1	AAKSTISTPLS	BBBABAABBBB
C	heavy	Camelus.dromedarius	Ca_IGHV1S61*01_VHH	86.3	Ca_IGHV1S61*01_VHH	50.0	H4	8	H4-8-1	11	RDFSRSTM	BBAAALBB
E	heavy	Camelus.dromedarius	Ca_IGHV1S27*01	94.5	Ca_IGHV1S27*01	69.2	H1	13	H1-13-1	9	AASGFPFHAYYMS	BBBLBBAAABBBB
E	heavy	Camelus.dromedarius	Ca_IGHV1S27*01	94.5	Ca_IGHV1S27*01	40.0	H2	10	H2-10-2	8	HIGNGGIITR	BBBAALABBB
E	heavy	Camelus.dromedarius	Ca_IGHV1S27*01	94.5	Ca_IGHV1S27*01	0.0	H3	11	H3-11-*	-1	TLGTRDDLGPE	BBEBAABAEAB
E	heavy	Camelus.dromedarius	Ca_IGHV1S27*01	94.5	Ca_IGHV1S27*01	100.0	H4	8	H4-8-1	11	RDNAKNTL	BBAAALBB
F	heavy	Camelus.dromedarius	Ca_IGHV1S61*01_VHH	86.3	Ca_IGHV1S61*01_VHH	53.8	H1	13	H1-13-*	-1	AASGSIDSLYHMG	BBABBAAABABBB
F	heavy	Camelus.dromedarius	Ca_IGHV1S61*01_VHH	86.3	Ca_IGHV1S61*01_VHH	33.3	H2	9	H2-9-1	12	RVQDGGSTA	BBBAALBBB
F	heavy	Camelus.dromedarius	Ca_IGHV1S61*01_VHH	86.3	Ca_IGHV1S61*01_VHH	0.0	H3	11	H3-11-*	-1	AAKSTISTPLS	BBBABAABBBB
F	heavy	Camelus.dromedarius	Ca_IGHV1S61*01_VHH	86.3	Ca_IGHV1S61*01_VHH	50.0	H4	8	H4-8-1	11	RDFSRSTM	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022