PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7SD2

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H1	13	H1-13-1	12	AASGFTFNTYAMN	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	75.0	H2	12	H2-12-1	18	RIRTKTNNyvTY	BBBBAAALLBBB
A	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	50.0	H3	7	H3-7-*	-1	VRHVGDY	BBEALAB
A	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H4	8	H4-8-1	7	RDDSQSML	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	22	RASGNIHNYLA	BBABBALLABB
B	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L2	8	L2-8-4	14	YNAKTLAD	BEAABBBB
B	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L3	9	L3-9-cis7-1	17	QHFWSTPYT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	11	GSGTQY	EBEABB
C	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H1	13	H1-13-1	11	AASGFTFNTYAMN	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	75.0	H2	12	H2-12-1	13	RIRTKTNNyvTY	BBBBAAALLBBB
C	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	50.0	H3	7	H3-7-*	-1	VRHVGDY	BBEALAB
C	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H4	8	H4-8-1	11	RDDSQSML	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	24	RASGNIHNYLA	BBABBALLABB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L2	8	L2-8-4	19	YNAKTLAD	BEAABBBB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L3	9	L3-9-cis7-1	20	QHFWSTPYT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	13	GSGTQY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H1	13	H1-13-1	11	AASGFTFNTYAMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	75.0	H2	12	H2-12-1	11	RIRTKTNNyvTY	BBBBAAALLBBB
H	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	50.0	H3	7	H3-7-*	-1	VRHVGDY	BBEALAB
H	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H4	8	H4-8-1	8	RDDSQSML	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	23	RASGNIHNYLA	BBABBALLABB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L2	8	L2-8-1	14	YNAKTLAD	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L3	9	L3-9-cis7-1	19	QHFWSTPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	10	GSGTQY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022