PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7RDL

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	75.0	L1	12	L1-12-*	-1	RASQSVSaKNLA	BBABBBBEABBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	8	YGVSIKNT	BLEABBBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L3	8	L3-8-3	9	QQYGSSPT	BBAABBBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV4-34*12	95.9	Hu_IGHV4-34*12	69.2	H1	13	H1-13-*	-1	AVYGESFSAFSWS	BBBEBBABLBBBB
B	heavy	Homo.sapiens	Hu_IGHV4-34*12	95.9	Hu_IGHV4-34*12	77.8	H2	9	H2-9-1	13	EVDHSGSTN	BBBAALBBB
B	heavy	Homo.sapiens	Hu_IGHV4-34*12	95.9	Hu_IGHV4-34*12	100.0	H3	22	H3-22-*	-1	ARGGRKVYhpywtgyvNNCFDP
B	heavy	Homo.sapiens	Hu_IGHV4-34*12	95.9	Hu_IGHV4-34*12	100.0	H4	8	H4-8-1	12	VDTSKNQF	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	75.0	L1	12	L1-12-*	-1	RASQSVSaKNLA	BBABBBBEABBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	9	YGVSIKNT	BLEABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L3	8	L3-8-3	10	QQYGSSPT	BBAABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV4-34*12	95.9	Hu_IGHV4-34*12	69.2	H1	13	H1-13-*	-1	AVYgeSFSAFSWS
D	heavy	Homo.sapiens	Hu_IGHV4-34*12	95.9	Hu_IGHV4-34*12	77.8	H2	9	H2-9-1	13	EVDHSGSTN	BBBAALBBB
D	heavy	Homo.sapiens	Hu_IGHV4-34*12	95.9	Hu_IGHV4-34*12	100.0	H3	22	H3-22-*	-1	ARGGRKVYhpywtgyvNNCFDP
D	heavy	Homo.sapiens	Hu_IGHV4-34*12	95.9	Hu_IGHV4-34*12	100.0	H4	8	H4-8-1	12	VDTSKNQF	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022