PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7RCS

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Hu_IGHV1-3*01	98.6	Hu_IGHV1-3*01	92.3	H1	13	H1-13-1	13	KASGYTFTSYAIH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Hu_IGHV1-3*01	98.6	Hu_IGHV1-3*01	80.0	H2	10	H2-10-1	10	WIKAGNGNTR	BBBAAALBBB
A	heavy	Mus.musculus	Hu_IGHV1-3*01	98.6	Hu_IGHV1-3*01	50.0	H3	14	H3-14-*	-1	ALLTVITPDDAFDI	BBBLBBBAABBBBB
A	heavy	Mus.musculus	Hu_IGHV1-3*01	98.6	Hu_IGHV1-3*01	100.0	H4	8	H4-8-1	9	RDTSASTA	BBAAALBB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	82.4	L1	17	L1-17-1	7	KSSQNIlfssnnKNYLA	BBABBABBAAALBBBBB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLLABBBB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	71.4	L3	9	L3-9-cis7-1	10	HQYYSSPLT	BBAABBbBB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
H	heavy	Mus.musculus	Hu_IGHV1-3*01	98.6	Hu_IGHV1-3*01	92.3	H1	13	H1-13-1	9	KASGYTFTSYAIH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Hu_IGHV1-3*01	98.6	Hu_IGHV1-3*01	80.0	H2	10	H2-10-1	12	WIKAGNGNTR	BBBAAALBBB
H	heavy	Mus.musculus	Hu_IGHV1-3*01	98.6	Hu_IGHV1-3*01	50.0	H3	14	H3-14-*	-1	ALLTVITPDDAFDI	BBBLBBBAABBBBB
H	heavy	Mus.musculus	Hu_IGHV1-3*01	98.6	Hu_IGHV1-3*01	100.0	H4	8	H4-8-1	8	RDTSASTA	BBAAALBB
L	kappa	Mus.musculus	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	82.4	L1	17	L1-17-1	8	KSSQNIlfssnnKNYLA	BBABBABBAAALBBBBB
L	kappa	Mus.musculus	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLLABBBB
L	kappa	Mus.musculus	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	71.4	L3	9	L3-9-cis7-1	6	HQYYSSPLT	BBAABBbBB
L	kappa	Mus.musculus	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022