PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7RAI

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	38.5	H1	13	H1-13-*	-1	KDSGGFFPYAGFR	BBBLELAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	50.0	H2	10	H2-10-1	18	GVIPADGTKH	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	100.0	H3	19	H3-19-*	-1	ARLQCAgfsceMDSGPFDL
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	37.5	H4	8	H4-8-1	10	VVESSRTL	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	38.5	H1	13	H1-13-*	-1	KDSGGFFPYAGFR	BBBLELAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	50.0	H2	10	H2-10-1	18	GVIPADGTKH	BBBAAALBBB
I	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	100.0	H3	19	H3-19-*	-1	ARLQCAgfsceMDSGPFDL
I	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	37.5	H4	8	H4-8-1	10	VVESSRTL	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	38.5	H1	13	H1-13-*	-1	KDSGGFFPYAGFR	BBBLELAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	50.0	H2	10	H2-10-1	19	GVIPADGTKH	BBBAAALBBB
J	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	100.0	H3	19	H3-19-*	-1	ARLQCAgfsceMDSGPFDL
J	heavy	Homo.sapiens	Hu_IGHV1-69*16	71.2	Hu_IGHV1-69*16	37.5	H4	8	H4-8-1	10	VVESSRTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	45.5	L1	11	L1-11-1	11	RTSQGVGNRLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	25.0	L2	8	L2-8-1	22	SRASNRHG	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	42.9	L3	9	L3-9-2	15	QQYYDSRET	BBAABABBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	83.3	L4	6	L4-6-1	17	GSGTIF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	45.5	L1	11	L1-11-1	11	RTSQGVGNRLA	BBABBAEABBB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	25.0	L2	8	L2-8-1	22	SRASNRHG	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	42.9	L3	9	L3-9-2	15	QQYYDSRET	BBAABABBB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	83.3	L4	6	L4-6-1	17	GSGTIF	EBEABB
N	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	45.5	L1	11	L1-11-1	11	RTSQGVGNRLA	BBABBAEABBB
N	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	25.0	L2	8	L2-8-1	22	SRASNRHG	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	42.9	L3	9	L3-9-2	14	QQYYDSRET	BBAABABBB
N	kappa	Homo.sapiens	Hu_IGKV1-5*03	75.4	Hu_IGKV1-5*03	83.3	L4	6	L4-6-1	17	GSGTIF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022