PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7PNQ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	92.3	H1	13	H1-13-*	-1	AVYGGSFSGYYWN	BBABBAAABABBB
D	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H2	9	H2-9-1	24	EINHSGSTN	BBBAALBBB
D	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H3	18	H3-18-*	-1	ARGNYYGSgsyvDYGMDV
D	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H4	8	H4-8-1	17	VDTSKNQF	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	90.9	L1	11	L1-11-1	16	RASQSISSNLA	BBABBAEABBB
F	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	L2	8	L2-8-1	26	YGASTRAT	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-*	-1	QQSNSWPLT	BBAABBaLB
F	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	9	GSGTEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	92.3	H1	13	H1-13-*	-1	AVYGGSFSGYYWN	BBABBAAABABBB
H	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H2	9	H2-9-1	24	EINHSGSTN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H3	18	H3-18-*	-1	ARGNYYGSgsyvDYGMDV
H	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H4	8	H4-8-1	17	VDTSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	90.9	L1	11	L1-11-1	17	RASQSISSNLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	L2	8	L2-8-1	26	YGASTRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-*	-1	QQSNSWPLT	BBAABBaLB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	9	GSGTEF	EBEABB
X	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	92.3	H1	13	H1-13-*	-1	AVYGGSFSGYYWN	BBABBAAABABBB
X	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H2	9	H2-9-1	24	EINHSGSTN	BBBAALBBB
X	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H3	18	H3-18-*	-1	ARGNYYGSgsyvDYGMDV
X	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H4	8	H4-8-1	17	VDTSKNQF	BBAAALBB
Y	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	90.9	L1	11	L1-11-1	16	RASQSISSNLA	BBABBAEABBB
Y	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	L2	8	L2-8-1	24	YGASTRAT	BLLABBBB
Y	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-*	-1	QQSNSWPLT	BBAABBaLB
Y	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	9	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022