PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7NDF

#CDRs = 4; #Clusters = 4.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	89.0	Al_IGHV3S53*01_VHH	61.5	H1	13	H1-13-1	20	AVSGSIFSIITLA	BBBLBBAAABBBB
C	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	89.0	Al_IGHV3S53*01_VHH	44.4	H2	9	H2-9-1	17	TITRGSRTS	BBBAALBBB
C	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	89.0	Al_IGHV3S53*01_VHH	100.0	H3	8	H3-8-*	-1	NAEGPAGY	BBLEAABB
C	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	89.0	Al_IGHV3S53*01_VHH	75.0	H4	8	H4-8-1	6	KDNAKSTV	BBAAALBB
D	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	89.0	Al_IGHV3S53*01_VHH	61.5	H1	13	H1-13-1	20	AVSGSIFSIITLA	BBBLBBAAABBBB
D	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	89.0	Al_IGHV3S53*01_VHH	44.4	H2	9	H2-9-1	18	TITRGSRTS	BBBAALBBB
D	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	89.0	Al_IGHV3S53*01_VHH	100.0	H3	8	H3-8-*	-1	NAEGPAGY	BBLEAABB
D	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	89.0	Al_IGHV3S53*01_VHH	75.0	H4	8	H4-8-1	7	KDNAKSTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022