PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7NDC

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	100.0	H1	13	H1-13-1	9	AASGFTFSSYGMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	70.0	H2	10	H2-10-2	6	LISYDGGNRY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	100.0	H3	16	H3-16-*	-1	AKDRddgwdwyYFMDV
D	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	75.0	L1	12	L1-12-2	6	RASQSISgNYLA	BBABBBBLLBBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	6	YGASTRAT	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	85.7	L3	8	L3-8-1	11	QQYGSSYT	BBAABEBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	100.0	H1	13	H1-13-1	9	AASGFTFSSYGMH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	70.0	H2	10	H2-10-2	6	LISYDGGNRY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	100.0	H3	16	H3-16-*	-1	AKDRddgwdwyYFMDV
F	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	75.0	L1	12	L1-12-2	6	RASQSISgNYLA	BBABBBBLLBBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	6	YGASTRAT	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	85.7	L3	8	L3-8-1	11	QQYGSSYT	BBAABEBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	100.0	H1	13	H1-13-1	9	AASGFTFSSYGMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	70.0	H2	10	H2-10-2	6	LISYDGGNRY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	100.0	H3	16	H3-16-*	-1	AKDRddgwdwyYFMDV
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	95.9	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	75.0	L1	12	L1-12-2	6	RASQSISgNYLA	BBABBBBLLBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	6	YGASTRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	85.7	L3	8	L3-8-1	11	QQYGSSYT	BBAABEBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022