PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7ND4

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	86.7	H1	15	H1-15-*	-1	TVSGGSISsgSYNWT	BBBLEBABABBBBBB
D	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	88.9	H2	9	H2-9-*	-1	RIYNSGSTN	BBBEALBBB
D	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	100.0	H3	19	H3-19-*	-1	ARHCSGgtcypKYYYGMDV
D	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	87.5	H4	8	H4-8-1	11	VDTSKNQL	BBAAALBB
E	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L1	13	L1-13-1	9	SGSSSNIGNNAVN	BBBAAAAAABBBB
E	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L2	8	L2-8-1	11	YYDDLLPS	BLLABBBB
E	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	88.9	L3	11	L3-11-1	11	AAWDDSLNVVV	BBBBAAALBBB
E	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L4	6	L4-6-2	10	KSGTSA	BBEABB
F	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	86.7	H1	15	H1-15-*	-1	TVSGGSISsgSYNWT	BBBLEBABABBBBBB
F	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	88.9	H2	9	H2-9-*	-1	RIYNSGSTN	BBBEALBBB
F	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	100.0	H3	19	H3-19-*	-1	ARHCSGgtcypKYYYGMDV
F	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	87.5	H4	8	H4-8-1	11	VDTSKNQL	BBAAALBB
G	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L1	13	L1-13-1	9	SGSSSNIGNNAVN	BBBAAAAAABBBB
G	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L2	8	L2-8-1	11	YYDDLLPS	BLLABBBB
G	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	88.9	L3	11	L3-11-1	11	AAWDDSLNVVV	BBBBAAALBBB
G	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L4	6	L4-6-2	10	KSGTSA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	86.7	H1	15	H1-15-*	-1	TVSGGSISsgSYNWT	BBBLEBABABBBBBB
H	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	88.9	H2	9	H2-9-*	-1	RIYNSGSTN	BBBEALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	100.0	H3	19	H3-19-*	-1	ARHCSGgtcypKYYYGMDV
H	heavy	Homo.sapiens	Hu_IGHV4-61*02	94.5	Hu_IGHV4-61*02	87.5	H4	8	H4-8-1	11	VDTSKNQL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L1	13	L1-13-1	9	SGSSSNIGNNAVN	BBBAAAAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L2	8	L2-8-1	11	YYDDLLPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	88.9	L3	11	L3-11-1	11	AAWDDSLNVVV	BBBBAAALBBB
L	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L4	6	L4-6-2	10	KSGTSA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022