PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7MMN

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	84.6	H1	13	H1-13-1	11	AASGFSFSHYAMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	80.0	H2	10	H2-10-2	13	VISYDGENTY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	100.0	H3	16	H3-16-*	-1	ARDRIVddYYYYGMDV
D	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	87.5	H4	8	H4-8-1	10	RDNSKNTV	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	81.8	L1	11	L1-11-*	-1	QASQDIKKYLN	BBABBAAABBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	13	HDASNLET	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L3	10	L3-10-*	-1	QQYDNlpPLT	BBBBLLBbBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	81.8	L1	11	L1-11-*	-1	QASQDIKKYLN	BBABBAAABBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	13	HDASNLET	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L3	10	L3-10-*	-1	QQYDNlpPLT	BBBABABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	84.6	H1	13	H1-13-1	11	AASGFSFSHYAMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	80.0	H2	10	H2-10-2	13	VISYDGENTY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	100.0	H3	16	H3-16-*	-1	ARDRIVddYYYYGMDV
H	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	87.5	H4	8	H4-8-1	10	RDNSKNTV	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	81.8	L1	11	L1-11-*	-1	QASQDIKKYLN	BBABBAAABBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	13	HDASNLET	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L3	10	L3-10-*	-1	QQYDNlpPLT	BBBBBLBBBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	84.6	H1	13	H1-13-1	11	AASGFSFSHYAMH	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	80.0	H2	10	H2-10-2	13	VISYDGENTY	BBBAALABBB
M	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	100.0	H3	16	H3-16-*	-1	ARDRIVddYYYYGMDV
M	heavy	Homo.sapiens	Hu_IGHV3-30*09	93.1	Hu_IGHV3-30*09	87.5	H4	8	H4-8-1	10	RDNSKNTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022