PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7MLU

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
F	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	61.5	H1	13	H1-13-1	21	KATGHTISRYWID	BBBLBBAAABBBB
F	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	100.0	H2	10	H2-10-1	14	EILPGSGSTN	BBBAAALBBB
F	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	50.0	H3	11	H3-11-*	-1	AMGVRGNYFDY	BBBABEABBAB
F	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	75.0	H4	8	H4-8-1	13	AEKSSNTA	BBAAALBB
G	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	61.5	H1	13	H1-13-1	21	KATGHTISRYWID	BBBLBBAAABBBB
G	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	100.0	H2	10	H2-10-1	14	EILPGSGSTN	BBBAAALBBB
G	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	50.0	H3	11	H3-11-*	-1	AMGVRGNYFDY	BBBABEABBAB
G	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	75.0	H4	8	H4-8-1	13	AEKSSNTA	BBAAALBB
H	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	61.5	H1	13	H1-13-1	20	KATGHTISRYWID	BBBLBBAAABBBB
H	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	100.0	H2	10	H2-10-1	14	EILPGSGSTN	BBBAAALBBB
H	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	50.0	H3	11	H3-11-*	-1	AMGVRGNYFDY	BBBABEABBAB
H	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	75.0	H4	8	H4-8-1	13	AEKSSNTA	BBAAALBB
I	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L1	11	L1-11-*	-1	KASQDVSTAVA	BBABBABABBB
I	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L2	8	L2-8-1	19	YWASTRHT	BLLABBBB
I	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L3	9	L3-9-2	24	QQHYSTPRT	BBAABABBB
I	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L4	6	L4-6-1	17	GSGTDY	EBEABB
J	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L1	11	L1-11-*	-1	KASQDVSTAVA	BBABBABABBB
J	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L2	8	L2-8-1	25	YWASTRHT	BLLABBBB
J	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L3	9	L3-9-2	24	QQHYSTPRT	BBAABABBB
J	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L4	6	L4-6-1	14	GSGTDY	EBEABB
K	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L1	11	L1-11-1	28	KASQDVSTAVA	BBABBALABBB
K	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L2	8	L2-8-1	25	YWASTRHT	BLLABBBB
K	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L3	9	L3-9-2	23	QQHYSTPRT	BBAABABBB
K	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L4	6	L4-6-1	16	GSGTDY	EBEABB
L	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	61.5	H1	13	H1-13-1	20	KATGHTISRYWID	BBBLBBAAABBBB
L	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	100.0	H2	10	H2-10-1	14	EILPGSGSTN	BBBAAALBBB
L	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	50.0	H3	11	H3-11-*	-1	AMGVRGNYFDY	BBBAAEABBAB
L	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	75.0	H4	8	H4-8-1	13	AEKSSNTA	BBAAALBB
M	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L1	11	L1-11-*	-1	KASQDVSTAVA	BBABBABABBB
M	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L2	8	L2-8-1	24	YWASTRHT	BLLABBBB
M	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L3	9	L3-9-2	27	QQHYSTPRT	BBAABABBB
M	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L4	6	L4-6-1	14	GSGTDY	EBEABB
N	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	61.5	H1	13	H1-13-1	21	KATGHTISRYWID	BBBLBBAAABBBB
N	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	100.0	H2	10	H2-10-1	14	EILPGSGSTN	BBBAAALBBB
N	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	50.0	H3	11	H3-11-*	-1	AMGVRGNYFDY	BBBAAEABBAB
N	heavy	Rattus.norvegicus	Mo_IGHV1-9*01	90.4	Mo_IGHV1-9*01	75.0	H4	8	H4-8-1	13	AEKSSNTA	BBAAALBB
O	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L1	11	L1-11-1	29	KASQDVSTAVA	BBABBALABBB
O	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L2	8	L2-8-1	24	YWASTRHT	BLLABBBB
O	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L3	9	L3-9-2	23	QQHYSTPRT	BBAABABBB
O	kappa	Rattus.norvegicus	Mo_IGKV6-25*01	97.1	Mo_IGKV6-25*01	100.0	L4	6	L4-6-1	16	GSGTDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022