PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7MJK

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H1	13	H1-13-*	-1	AASGFTVSSNYMS	BBAABBAAABBBB
D	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H2	9	H2-9-1	9	VIYSGGSTY	BBBAALBBB
D	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H3	11	H3-11-*	-1	ARGYGDYYFDY	BBBBEBABBAB
D	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H4	8	H4-8-1	14	RHNSKNTL	BBAAALBB
E	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	CDRLenMismatch	-1.0	L1	11	L1-11-*	-1	RASQSVSSYLA	BBABBBAABBB
E	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	Hu_IGKV3D-20*02	50.0	L2	8	L2-8-1	14	YWASTRES	BLLABBBB
E	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	Hu_IGKV3D-20*02	28.6	L3	9	L3-9-2	12	QQYGSSPLT	BBAABABBB
E	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
F	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H1	13	H1-13-*	-1	AASGFTVSSNYMS	BBAABBAAABBBB
F	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H2	9	H2-9-1	9	VIYSGGSTY	BBBAALBBB
F	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H3	11	H3-11-*	-1	ARGYGDYYFDY	BBBBEBABBAB
F	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H4	8	H4-8-1	14	RHNSKNTL	BBAAALBB
G	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	CDRLenMismatch	-1.0	L1	11	L1-11-*	-1	RASQSVSSYLA	BBABBBAABBB
G	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	Hu_IGKV3D-20*02	50.0	L2	8	L2-8-1	14	YWASTRES	BLLABBBB
G	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	Hu_IGKV3D-20*02	28.6	L3	9	L3-9-2	12	QQYGSSPLT	BBAABABBB
G	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
H	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H1	13	H1-13-*	-1	AASGFTVSSNYMS	BBAABBAAABBBB
H	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H2	9	H2-9-1	9	VIYSGGSTY	BBBAALBBB
H	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H3	11	H3-11-*	-1	ARGYGDYYFDY	BBBBEBABBAB
H	heavy	Synthetic.construct	Hu_IGHV3-53*04	100.0	Hu_IGHV3-53*04	100.0	H4	8	H4-8-1	14	RHNSKNTL	BBAAALBB
I	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	CDRLenMismatch	-1.0	L1	11	L1-11-*	-1	RASQSVSSYLA	BBABBBAABBB
I	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	Hu_IGKV3D-20*02	50.0	L2	8	L2-8-1	14	YWASTRES	BLLABBBB
I	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	Hu_IGKV3D-20*02	28.6	L3	9	L3-9-2	12	QQYGSSPLT	BBAABABBB
I	kappa	Synthetic.construct	Hu_IGKV3D-20*02	84.1	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022